View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9330_low_47 (Length: 253)
Name: NF9330_low_47
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9330_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 9801542 - 9801761
Alignment:
| Q |
21 |
ggaactggttatgtatggatagccactgcttttctttctgctattcttgatatagaaagtccattgccttctgataaaatggatgaaatccaaggagtgt |
120 |
Q |
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| T |
9801542 |
ggaactggttatgtatggatagccactgcttttctttctgctattcttgatatagaaagtccattgccttctgataaaatggatgaaatccaaggagtgt |
9801641 |
T |
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| Q |
121 |
tgacagcacgcgtgcacacgccagattcggagcttaaaagaaagtttgtttctaaatggcaaaacttgactcatggaaatactgataacggccctcttgg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9801642 |
tgacagcacgcgtgcacacgccagattcggagcttaaaagaaagtttgtttctaaatggcaaaacttgactcatggaaatactgataatggccctcttgg |
9801741 |
T |
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| Q |
221 |
acttagttttttgtctctct |
240 |
Q |
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||| |||||||||||||||| |
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| T |
9801742 |
actaagttttttgtctctct |
9801761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 9787912 - 9787692
Alignment:
| Q |
20 |
gggaactggttatgtatggatagccactgcttttctttctgctattcttgatatagaaagtccattgccttctgataaaatggatgaaatccaaggagtg |
119 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||| |||| |
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| T |
9787912 |
gggaactggttatgtatggataaccactgcttttctttctgctattcttgatataaatagtccattgtcttctgatgcaatggatgaaatccaagaagtg |
9787813 |
T |
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| Q |
120 |
ttgacagcacgcgtgcacacgccagattcggagcttaaaagaaagtttgtttctaaatggcaaaacttgactcatggaaatactgataacggccctcttg |
219 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
9787812 |
ttgacaacacgcgtgcacacgccatattcggagcttaaaagaaagtttgtttctaaatggcaaaacttgactcgcggaaatactgatagtggccctcttg |
9787713 |
T |
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| Q |
220 |
gacttagttttttgtctctct |
240 |
Q |
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||||||||||||||||||||| |
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| T |
9787712 |
gacttagttttttgtctctct |
9787692 |
T |
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