View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9330_low_52 (Length: 246)
Name: NF9330_low_52
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9330_low_52 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32559085 - 32558858
Alignment:
| Q |
1 |
attgatagattccattgcagaaaaacaggcacaaatattttcggaagactataaattgtttcctgcagatgttcagattcagtcaatatatccattgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32559085 |
attgatagattccattgcagaaaaacaggcacaaatattttcggaagactataaattgtttcctgcagatgttcagattcagtcaatatatccattgtaa |
32558986 |
T |
|
| Q |
101 |
aagtttcttgcttctttttattatcatgaatttttactttttcaatttgtgatttctagtagaggaacatatcttcatttcattatgatgggcttgcatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32558985 |
aagtttcttgcttctttttattatcatgaatttttactttttcaatttgtgatttctagtagaggaacatatcttcatttcattatgatgggcttgcatt |
32558886 |
T |
|
| Q |
201 |
tgtatctgaatttgcttattactgtaac |
228 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
32558885 |
tgtatctgaagttgcttattactgtaac |
32558858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 20410674 - 20410861
Alignment:
| Q |
2 |
ttgatagattccattgcagaaaaacaggcacaaatattttcggaagactataaattgtttcctgcagatgttcagattcagtcaatatatccattgtaaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
20410674 |
ttgatagattccattgcagaaaaacaggcacaaatattttctgaagaatgtaaattgtttcccgcagatgttcagattcagtccatatatcccttgtaag |
20410773 |
T |
|
| Q |
102 |
agtttcttgctt---cttt-ttattatcatgaatttttactttttcaatttgtgatttctagtagaggaacatatcttcatttcatta |
185 |
Q |
| |
|
||||| ||||| |||| || | | |||||||||||| | | || | ||||||||||| |||||||||| || || ||||||||| |
|
|
| T |
20410774 |
agtttgatgctttccctttcttctgcttatgaatttttacctatccattctgtgatttctattagaggaacacatttttatttcatta |
20410861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 17843418 - 17843522
Alignment:
| Q |
2 |
ttgatagattccattgcagaaaaacaggcacaaatattttcggaagactataaattgtttcctgcagatgttcagattcagtcaatatatccattgtaaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
17843418 |
ttgatagattccattgcagaaaaacaggcacaaatattttctgaagaatgtaaattgtttcccgcagatgttcagattcagtccatatatcccttgtaag |
17843517 |
T |
|
| Q |
102 |
agttt |
106 |
Q |
| |
|
||||| |
|
|
| T |
17843518 |
agttt |
17843522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 5307902 - 5308006
Alignment:
| Q |
2 |
ttgatagattccattgcagaaaaacaggcacaaatattttcggaagactataaattgtttcctgcagatgttcagattcagtcaatatatccattgtaaa |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
5307902 |
ttgatagattctattgcagaaaaacaggcacaaatattttctgaagaatgtaaattgtttcccgcagatgttcagattcagtccatatatcccttgtaag |
5308001 |
T |
|
| Q |
102 |
agttt |
106 |
Q |
| |
|
||||| |
|
|
| T |
5308002 |
agttt |
5308006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University