View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9330_low_60 (Length: 237)
Name: NF9330_low_60
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9330_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 25925846 - 25925625
Alignment:
| Q |
1 |
ttaataacttatattacaagatctgcaatcacattttatctaatccaaaataagcaataacatcaaggacgggcgaagttaaaatacctgagtagcatca |
100 |
Q |
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| T |
25925846 |
ttaataacttatattacaagatctgcaatcacattttatctaatccaaaataagcaataacatcaaggactggcgaagttaaaatacctgagtagcatca |
25925747 |
T |
|
| Q |
101 |
caaattgtgttgaagcttatgaagtgctcagtaacgttttccacgccatatttgcgcatcatagtcctctccactagtctgcctataaaatgatcaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25925746 |
caaattgtgttgaagcttatgaagtgctcagtaacgttttccacgccatatttgcgcatcatagtcctctccactagtctgcctataaaatgatcaacaa |
25925647 |
T |
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| Q |
201 |
aatacatatcacagttagttat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
25925646 |
aatacatatcacagttagttat |
25925625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 25947477 - 25947287
Alignment:
| Q |
23 |
ctgcaatcacattttatctaatccaaaataagcaataacatcaagg-acgggcgaagttaaaatacctgagtagcatcacaaattgtgttgaagcttatg |
121 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||| |||| || | ||||| |||| ||||||||||||| |||||||||||||||||||||| |
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| T |
25947477 |
ctgcaatcacattttatcatatccaaaataagcaagaacataaagggactagagaagtgaaaacacctgagtagcattacaaattgtgttgaagcttatg |
25947378 |
T |
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| Q |
122 |
aagtgctcagtaacgttttccacgccatatttgcgcatcatagtcctctccactagtctgcctataaaatgatcaacaaaatacatatcac |
212 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||| || ||| ||| | ||| | | ||||| ||||||||||||||| |
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| T |
25947377 |
aagtgctcattaacgttttccacgccaaatttgcgcatcatagtccactgcacaagtttccctgtgatccgatcagcaaaatacatatcac |
25947287 |
T |
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