View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9330_low_62 (Length: 224)
Name: NF9330_low_62
Description: NF9330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9330_low_62 |
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| [»] scaffold0636 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 5560732 - 5560650
Alignment:
| Q |
19 |
gagttattggttgaaccgcataaaagaatcggatgactcagtcatttcactcggtctgatctttgtattaaacaagttgactc |
101 |
Q |
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| T |
5560732 |
gagttattggtcgaaccgcatgaaagaatcggatgactcggtcatttcactcggtctgatctttgtattaaacaagttgactc |
5560650 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 32988269 - 32988184
Alignment:
| Q |
19 |
gagttattggttgaaccgcataaaagaatcggatgactcagtcatttcactcggtctgatctttgtattaaacaagttgactcggtc |
105 |
Q |
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| T |
32988269 |
gagtcattggtcgaaccgcatgaaagaatcggatgactc-gtcatttcactcggtctaatctttgtattaaacaagttgactcggtc |
32988184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0636 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0636
Description:
Target: scaffold0636; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 1599 - 1680
Alignment:
| Q |
24 |
attggttgaaccgcataaaagaatcggatgactcagtcatttcactcggtctgatctttgtattaaacaagttgactcggtc |
105 |
Q |
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| T |
1599 |
attggtcgaaccgcatgaaagaatcggatgactcggtcatttcactcggtctattctttgtattaaacaagttgactcggtc |
1680 |
T |
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Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 49095851 - 49095925
Alignment:
| Q |
31 |
gaaccgcataaaagaatcggatgactcagtcatttcactcggtctgatctttgtattaaacaagttgactcggtc |
105 |
Q |
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| T |
49095851 |
gaaccgcatgaaagaatcggatgactcgatcatttcactcgatctaatctttgtattaaacaagttgactcggtc |
49095925 |
T |
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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 40337639 - 40337719
Alignment:
| Q |
24 |
attggttgaaccgcataaaagaatcggatgactcagtcatttcactcggtctgatctttgtattaaacaagttgactcggt |
104 |
Q |
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| T |
40337639 |
attggtcgaaccgcatgaaaggttcggatgactctgtcatttcactcagcctgatctttgtattaaacaagttgactcggt |
40337719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 27872600 - 27872650
Alignment:
| Q |
25 |
ttggttgaaccgcataaaagaatcggatgactcagtcatttcactcggtct |
75 |
Q |
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| T |
27872600 |
ttggttgaactgcataaaagaatcagatgacttggttatttcactcggtct |
27872650 |
T |
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