View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9331_high_11 (Length: 309)
Name: NF9331_high_11
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 111 - 302
Target Start/End: Complemental strand, 43456020 - 43455829
Alignment:
| Q |
111 |
aatattggagaaggagaatatattattagtttgtacatgaaaattggactcatttcttgaggttacaaggtcaaactcttaccagtgagccgacacctca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
43456020 |
aatattggagaaggagaatatattattagtttgtacatgaaaattggactcgtttcttgaggttacaaggtcaaactcttactagtgagctgacacctca |
43455921 |
T |
|
| Q |
211 |
tgaatagacacaatgaacttttcattcagttgttcgaaaagggaaacacataacattgtaatatgtactcacattattttgatcagcttctc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43455920 |
tgaatagacacaatgaacttttcattcagttgttcgaaaatggaagcacataacattgtaatatgtactcacattattttgatcagcttctc |
43455829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 43456149 - 43456047
Alignment:
| Q |
6 |
agccacaaattcattgaagtctatttgtccatcctgaaagggtaaaacaatgaacataccaaaatcatcaaaacatgtatgagatgttaaaaggcattat |
105 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43456149 |
agccacaaattcattgtagtctatttgtccatcctgaaagggtaaaacaatgaacataccaaaatcatcaaaacatgtatgagatcttaaaaggcattat |
43456050 |
T |
|
| Q |
106 |
tta |
108 |
Q |
| |
|
||| |
|
|
| T |
43456049 |
tta |
43456047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 43464369 - 43464267
Alignment:
| Q |
6 |
agccacaaattcattgaagtctatttgtccatcctgaaagggtaaaacaatgaacataccaaaatcatcaaaacatgtatgagatgttaaaaggcattat |
105 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| || |
|
|
| T |
43464369 |
agccacaaattcattgtagtctatttgtccatcctgaaaggataaaacaatgaacataccaaaatcatcaaaagatgtatgagatttgaaaaggcatgat |
43464270 |
T |
|
| Q |
106 |
tta |
108 |
Q |
| |
|
||| |
|
|
| T |
43464269 |
tta |
43464267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 266
Target Start/End: Complemental strand, 43464180 - 43464052
Alignment:
| Q |
142 |
tgtacatgaaaattggactca-tttcttgaggttacaaggtcaaactcttaccagtgagccgacacctcatgaat---agacacaatgaacttttcattc |
237 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||| |||||||| |||||| ||| | ||||||||| ||| ||| |||| ||||||||||| |
|
|
| T |
43464180 |
tgtacaggaaaattggactcagtttctcaaggttacaatgtcaaacttttaccattgaacttacacctcataaatagaagattcaatttacttttcattc |
43464081 |
T |
|
| Q |
238 |
agttgttcgaaaagggaaacacataacat |
266 |
Q |
| |
|
| ||||| ||||| ||||||||||||||| |
|
|
| T |
43464080 |
aattgttggaaaatggaaacacataacat |
43464052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 47178688 - 47178643
Alignment:
| Q |
166 |
cttgaggttacaaggtcaaactcttaccagtgagccgacacctcat |
211 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| |||||| |||| |
|
|
| T |
47178688 |
cttgaggttacaagatcaagctcttaccagtgagtcgacacttcat |
47178643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 12556907 - 12556954
Alignment:
| Q |
165 |
tcttgaggttacaaggtcaaactcttaccagtgagccgacacctcatg |
212 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
12556907 |
tcttgatgttacaaagtcaaactcttaccaatgagctgacacctcatg |
12556954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 41337693 - 41337651
Alignment:
| Q |
166 |
cttgaggttacaaggtcaaactcttaccagtgagccgacacct |
208 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| ||||||| |
|
|
| T |
41337693 |
cttgaggttataaggtcaaactcttaccactgagctgacacct |
41337651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 15804395 - 15804423
Alignment:
| Q |
166 |
cttgaggttacaaggtcaaactcttacca |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15804395 |
cttgaggttacaaggtcaaactcttacca |
15804423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University