View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9331_high_12 (Length: 308)
Name: NF9331_high_12
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 50489565 - 50489287
Alignment:
| Q |
11 |
gaagcagagactacgaggagacataaatgttcttcttctcggtgatccaggaacagcaaagtctcaatttcttaagtataaacttatcctttgttattta |
110 |
Q |
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| T |
50489565 |
gaagcatagactacgaggagacataaatgttcttcttctcggtgatccaggaacagcaaagtctcaatttcttaagtataaacttatcctttgttattta |
50489466 |
T |
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| Q |
111 |
taggattcttttaatttttaatggcgatcaattaattgttaaatattacaaaattctgctgtcagatatgttgaaaaaactggacagagagctgtataca |
210 |
Q |
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|||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50489465 |
taggattcttttaatttttaatggtgatcaattagttattaaatattacaaaattctgctgtcagatatgttgaaaaaactggacagagagctgtataca |
50489366 |
T |
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| Q |
211 |
ccactggcaaaggggcttctgctgtgggtctcacagctgcagtccacaaagatccagtcacaagggaatggacccttga |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50489365 |
ccactggcaaaggggcttctgctgtgggtctcacagctgcagtccacaaagatccagtcacaagggaatggacccttga |
50489287 |
T |
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