View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9331_high_14 (Length: 301)
Name: NF9331_high_14
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 50093443 - 50093176
Alignment:
| Q |
18 |
gattgattactctttaaaattttaatcttatgtagagtataaaattgtaactaactttatgacatgtgagaattgtgttaaaagaagaaactaatatatc |
117 |
Q |
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| T |
50093443 |
gattgattactctttaaaattttaatcttatgtagagtataaaattgtaactaactttatgacatgtgagaattgtgttaaaagaagagactaatatatc |
50093344 |
T |
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| Q |
118 |
aatttgttaatatgtgcttctcccnnnnnnngaatatgtgatgagtggaatttctgtcatcgtatgttagaattcaaaaaagaaaattattgtcttaaaa |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50093343 |
aatttgttaatatgtgcttctcccaaaaaaagaatatgtgatgagtggaatttctgtcatcgtatgttagaattcaaaaaagaaaattattgtcttaaaa |
50093244 |
T |
|
| Q |
218 |
taacttagaggtaaaacacactgactaaaggtgagattttatgtgtaaccccttcggttgaatctgtg |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50093243 |
taacttagaggtaaaacacactgactaaaggtgagattttatgtgtaaccccttcggttgaatctgtg |
50093176 |
T |
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