View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9331_high_16 (Length: 284)

Name: NF9331_high_16
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9331_high_16
NF9331_high_16
[»] scaffold0017 (1 HSPs)
scaffold0017 (69-137)||(39245-39313)
[»] chr8 (2 HSPs)
chr8 (69-138)||(21350033-21350102)
chr8 (238-284)||(45536391-45536437)
[»] chr7 (1 HSPs)
chr7 (69-138)||(26645472-26645541)
[»] chr2 (1 HSPs)
chr2 (26-129)||(13652971-13653072)
[»] chr3 (1 HSPs)
chr3 (230-284)||(24563386-24563440)
[»] chr6 (3 HSPs)
chr6 (71-137)||(13549020-13549086)
chr6 (69-138)||(31876363-31876432)
chr6 (69-138)||(7457666-7457738)
[»] chr4 (1 HSPs)
chr4 (69-138)||(51030814-51030883)


Alignment Details
Target: scaffold0017 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 39245 - 39313
Alignment:
Q  69 ccaaaaccaaattattttctttgaaatcaaaatataagatatgtttatcatctctatttacatcacact 137  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39245 ccaaaatcaaattattttctttgaaatcaaaatataagatatgttcatcatctctatttacatcacact 39313  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 21350033 - 21350102
Alignment:
Q  69 ccaaaaccaaattattttctttgaaatcaaaatataagatatgtttatcatctctatttacatcacactc 138  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||    
T  21350033 ccaaaaccaaattattttctttgaaatcaaaatataagacatgtacatcatctctatttacatcacactc 21350102  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 45536437 - 45536391
Alignment:
Q  238 tctagttctatactctgtaaattcattgtgtgattgcattgcctcca 284  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  45536437 tctagttctatactctgtaaattcattatgtgattgcattgcctcca 45536391  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 26645541 - 26645472
Alignment:
Q  69 ccaaaaccaaattattttctttgaaatcaaaatataagatatgtttatcatctctatttacatcacactc 138  Q
    |||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||||||||||    
T  26645541 ccaaaaccaaatcattttctttgaaatcaaaatataagacatattcatcatctctatttacatcacactc 26645472  T

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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 13652971 - 13653072
Alignment:
Q  26 aaaattgggtatttatttatagttatgtatggaaggnnnnnnnccaaaaccaaattattttctttgaaatcaaaatataagatatgtttatcatctctat 125  Q
    |||||||||| ||||||||||||||| |||||||         ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  13652971 aaaattgggtctttatttatagttatatatggaa--aaaaataccaaaaccaaattattttctttgaaatcaaaatataagacatgttcatcatatctat 13653068  T
Q  126 ttac 129  Q
    ||||    
T  13653069 ttac 13653072  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 24563386 - 24563440
Alignment:
Q  230 gaatcacgtctagttctatactctgtaaattcattgtgtgattgcattgcctcca 284  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24563386 gaatcacgtctagttttatactctgtaaattcattgtgtgattgcattgcctcca 24563440  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 13549020 - 13549086
Alignment:
Q  71 aaaaccaaattattttctttgaaatcaaaatataagatatgtttatcatctctatttacatcacact 137  Q
    ||||||||||||||||||| ||||||||||||||||| || ||  ||||||||||||||||||||||    
T  13549020 aaaaccaaattattttcttcgaaatcaaaatataagaaatattcttcatctctatttacatcacact 13549086  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 31876432 - 31876363
Alignment:
Q  69 ccaaaaccaaattattttctttgaaatcaaaatataagatatgtttatcatctctatttacatcacactc 138  Q
    |||||||||||| ||||| |||||||| |||| |||||| ||||| |||||||||| |||||||||||||    
T  31876432 ccaaaaccaaatcattttgtttgaaataaaaaaataagacatgttcatcatctctacttacatcacactc 31876363  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 7457666 - 7457738
Alignment:
Q  69 ccaaaaccaaattattttctttgaaatcaaaata---taagatatgtttatcatctctatttacatcacactc 138  Q
    |||||||||||| ||||| |||||||| |||| |   ||||| ||||| |||||||||| |||||||||||||    
T  7457666 ccaaaaccaaatcattttgtttgaaataaaaaaaaaataagacatgttcatcatctctacttacatcacactc 7457738  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 51030814 - 51030883
Alignment:
Q  69 ccaaaaccaaattattttctttgaaatcaaaatataagatatgtttatcatctctatttacatcacactc 138  Q
    |||| ||||||| |||||||||||||||||||||||||| || || |||||||||| |||||||||||||    
T  51030814 ccaagaccaaatcattttctttgaaatcaaaatataagacatattcatcatctctacttacatcacactc 51030883  T

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