View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9331_high_4 (Length: 422)
Name: NF9331_high_4
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 24224338 - 24224742
Alignment:
| Q |
17 |
cataacaaacacacaagaaaaattccccaaatctaacacattcattcaagtataaataacagcactgaaaaatcacaaagataaaacaaaac-------- |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24224338 |
cataacaaacacacaagaaaaattccccaaatctaacacattcattcaagtataaataacagcactgaaaaatcacaaagataaaacaaaaccaaacaca |
24224437 |
T |
|
| Q |
109 |
----atacatgaatcattgaaatcaattctgctttaaataaagacggcgaccaatctcaaacgaaacaaaagcatcaacagtagcatatttaacctgatc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24224438 |
gaacatacatgaatcattgaaatcaattctgctttgaataaagacggcgaccaatctcaaacgaaacaaaagcatcaacagtagcatatttaacctgatc |
24224537 |
T |
|
| Q |
205 |
aacattaagccaaggataatcccatctactcatcgaaaccttcttcggtttcacaagagttttcccaatcaccttttgcgtcaaactcttaatcccagtc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24224538 |
aacattaagccaaggataatcccatctactcatcgaaaccttcttcggtttcacaagagttttcccaatcaccttttgcgtcaaactcttaatcccagtc |
24224637 |
T |
|
| Q |
305 |
ttcaacatttcctgatcatccatgacctcagcagcaaggtttctcaaatcaacgtaattcgaaacggtaatattataatctttcataagcttgtcaacat |
404 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24224638 |
ttcaacatttcatgatcatccatgacctcagcagcaaggtttctcaaatcaacgtaattcgaaacggtaatattataatctttcataagcttgtcaacat |
24224737 |
T |
|
| Q |
405 |
cttct |
409 |
Q |
| |
|
||||| |
|
|
| T |
24224738 |
cttct |
24224742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 24209905 - 24210008
Alignment:
| Q |
141 |
aataaagacggcgaccaatctcaaacgaaacaaaagcatcaacagtagcatatttaacctgatcaacattaagccaaggataatcccatctactcatcga |
240 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||||| | || | |||||||||| |||||| ||||||||||| |
|
|
| T |
24209905 |
aatagagacgacgaccaatctcaaaggaaacaaaagcatcaacagttgcaaatttaacctgaatagcactgagccaaggattatcccacctactcatcga |
24210004 |
T |
|
| Q |
241 |
aacc |
244 |
Q |
| |
|
|||| |
|
|
| T |
24210005 |
aacc |
24210008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 24229644 - 24229581
Alignment:
| Q |
141 |
aataaagacggcgaccaatctcaaacgaaacaaaagcatcaacagtagcatatttaacctgatc |
204 |
Q |
| |
|
|||||||||| ||| |||||||||| |||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
24229644 |
aataaagacgacgagcaatctcaaaggaaagaaaagcatcaacagtagcatacttaacctgatc |
24229581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 24215659 - 24215732
Alignment:
| Q |
141 |
aataaagacggcgaccaatctcaaacgaaacaaaagcatcaacagtagcatatttaacctgatcaacattaagc |
214 |
Q |
| |
|
|||| ||||| | ||| |||||||| |||||||||||||||||||| ||||| |||||||||||| || ||||| |
|
|
| T |
24215659 |
aatagagacgacaaccgatctcaaatgaaacaaaagcatcaacagttgcatacttaacctgatcagcactaagc |
24215732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 24215575 - 24215611
Alignment:
| Q |
67 |
tataaataacagcactgaaaaatcacaaagataaaac |
103 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
24215575 |
tatatataacagcactaaaaaatcacaaagataaaac |
24215611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University