View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9331_low_11 (Length: 442)

Name: NF9331_low_11
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9331_low_11
NF9331_low_11
[»] chr1 (3 HSPs)
chr1 (19-429)||(27656560-27656970)
chr1 (332-415)||(28351315-28351398)
chr1 (252-323)||(23713980-23714052)
[»] chr3 (8 HSPs)
chr3 (320-416)||(20532502-20532598)
chr3 (254-323)||(16983938-16984007)
chr3 (255-324)||(20532624-20532692)
chr3 (355-416)||(47844140-47844201)
chr3 (320-371)||(21014360-21014411)
chr3 (327-415)||(7031485-7031573)
chr3 (328-380)||(15312167-15312219)
chr3 (328-364)||(26771505-26771541)
[»] chr5 (6 HSPs)
chr5 (320-416)||(18148205-18148301)
chr5 (328-376)||(19255630-19255678)
chr5 (328-364)||(26019496-26019532)
chr5 (320-364)||(27167611-27167655)
chr5 (357-416)||(39073407-39073466)
chr5 (336-364)||(42927724-42927752)
[»] chr2 (8 HSPs)
chr2 (320-376)||(44472935-44472991)
chr2 (333-412)||(7708836-7708915)
chr2 (345-390)||(26317580-26317625)
chr2 (325-386)||(37444722-37444783)
chr2 (331-364)||(17765481-17765514)
chr2 (320-364)||(20240003-20240047)
chr2 (255-319)||(20240077-20240141)
chr2 (317-389)||(42245905-42245977)
[»] chr7 (5 HSPs)
chr7 (175-238)||(41309780-41309843)
chr7 (327-387)||(9895276-9895336)
chr7 (171-238)||(41324478-41324545)
chr7 (333-387)||(38652447-38652501)
chr7 (336-376)||(11277760-11277800)
[»] chr6 (6 HSPs)
chr6 (253-300)||(3731346-3731393)
chr6 (252-321)||(33184916-33184984)
chr6 (320-416)||(33185013-33185109)
chr6 (254-311)||(10919711-10919768)
chr6 (327-364)||(15959333-15959370)
chr6 (332-366)||(10587381-10587415)
[»] chr8 (6 HSPs)
chr8 (320-385)||(45439370-45439434)
chr8 (352-386)||(9594695-9594729)
chr8 (336-376)||(13395981-13396021)
chr8 (255-315)||(18257649-18257709)
chr8 (336-376)||(41665876-41665916)
chr8 (358-418)||(43845535-43845595)
[»] chr4 (1 HSPs)
chr4 (333-386)||(2187028-2187081)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 27656560 - 27656970
Alignment:
Q  19 atactatgcatgtaatgcaatgtcacttgattaacaaagagctatatcctcattcctgtatgattatttctagattctagttcatgtatatctatatagt 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||| ||||||| ||||||||||||||||||||||||||    
T  27656560 atactatgcatgtaatgcaatgtcacttaattaacaaagagctatatcctcatttttgtatgattgtttctagtttctagttcatgtatatctatatagt 27656659  T
Q  119 ccattgattatgacctataagtaacaatgcagagaattcccaaagttaaggttgctgtgaagaagataatttttaggacattaaaacttttcttctgggg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  27656660 ccattgattatgacctataagtaacaatgcagagaattcccaaagttaaggttgctgtgaagaagataatttttaggacattaaagcttctcttctgggg 27656759  T
Q  219 tttacttttgcaaggtaaacnnnnnnnnattaggccaaaatgaattatattaacactgacaacgcaatcgcctcagcacaaggcgtgacaaagcaattac 318  Q
    ||||||||||||||||||||        || |||||||||||||||||||||||||||||| | |||||| ||||||||||| |||| |||| |||| ||    
T  27656760 tttacttttgcaaggtaaacttttttttatcaggccaaaatgaattatattaacactgacagcacaatcgtctcagcacaagacgtgccaaaacaatcac 27656859  T
Q  319 gaaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccaccacaaaaa 418  Q
    ||||||||||| |||| | |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27656860 gaaaaagctagccgatcctcaaaaataaaagtgggctcgaccaccacaaatgagtactgaaaacaaaattaatcttgctagctttcagccaccacaaaaa 27656959  T
Q  419 cctttacctct 429  Q
    |||||||||||    
T  27656960 cctttacctct 27656970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 28351315 - 28351398
Alignment:
Q  332 gatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccaccacaa 415  Q
    |||||| ||||| | |||||||||||||||||||||| |||||| ||||| |||  ||   || |||||||||| |||||||||    
T  28351315 gatgccaaaacacataagtgggctcgaccaccacaaacgagtactgaaaataaaggtagcgttactagctttcaaccaccacaa 28351398  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 323
Target Start/End: Complemental strand, 23714052 - 23713980
Alignment:
Q  252 gccaaaatgaattatattaacactgac-aacgcaatcgcctcagcacaaggcgtgacaaagcaattacgaaaa 323  Q
    |||||||| ||||||||||||||| || || |||||||| | ||||||| ||||| ||||  |||||||||||    
T  23714052 gccaaaataaattatattaacactaacaaatgcaatcgcataagcacaaagcgtgccaaaataattacgaaaa 23713980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 320 - 416
Target Start/End: Complemental strand, 20532598 - 20532502
Alignment:
Q  320 aaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccaccacaaa 416  Q
    ||||| |||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||   | |||| || ||||||||||||||||||    
T  20532598 aaaaatctagccgatgcccaaacacataagtgggctcgaccaccacaaatgagtgccgaaaacaaaggcagtcttactggctttcagccaccacaaa 20532502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 16983938 - 16984007
Alignment:
Q  254 caaaatgaattatattaacactgacaacgcaatcgcctcagcacaaggcgtgacaaagcaattacgaaaa 323  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||||||||| |||| |||| |||||||    
T  16983938 caaaatgaattatattaacactgacagtgcaatcgcttcagcacaaggcgtgccaaaacaatcacgaaaa 16984007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 20532692 - 20532624
Alignment:
Q  255 aaaatgaattatattaacactgacaacgcaatcgcctcagcacaaggcgtgacaaagcaattacgaaaaa 324  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||| ||| ||||||||    
T  20532692 aaaatgaattatattaacactgacaacgcaatcgcc-cagtacaaggcgtgcgaaagaaatcacgaaaaa 20532624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 47844201 - 47844140
Alignment:
Q  355 tcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccaccacaaa 416  Q
    ||||||||||||||||| ||||||||| ||||||   ||| |||||||| ||||||||||||    
T  47844201 tcgaccaccacaaatgaataccgaaaataaaattggcctttctagcttttagccaccacaaa 47844140  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 21014360 - 21014411
Alignment:
Q  320 aaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatga 371  Q
    |||||| ||| ||||||||||||| | |||||||||| ||||||||||||||    
T  21014360 aaaaagttagacgatgcccaaacacataagtgggctcaaccaccacaaatga 21014411  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 415
Target Start/End: Complemental strand, 7031573 - 7031485
Alignment:
Q  327 tagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccaccacaa 415  Q
    ||||| ||||||||||||| ||| ||||||||||||||   ||| ||||| |||| ||||   || || |||||||||| |||||||||    
T  7031573 tagtcaatgcccaaacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaaaactatgttactagctttcaaccaccacaa 7031485  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 15312167 - 15312219
Alignment:
Q  328 agtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaa 380  Q
    ||||||| |||| |||||| |||||| |||||||||| | |||||||||||||    
T  15312167 agtcgatacccatacataagagtgggttcgaccaccaaagatgagtaccgaaa 15312219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 364
Target Start/End: Complemental strand, 26771541 - 26771505
Alignment:
Q  328 agtcgatgcccaaacataaaagtgggctcgaccacca 364  Q
    ||||||||| || ||||||||||||||||||||||||    
T  26771541 agtcgatgctcatacataaaagtgggctcgaccacca 26771505  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 416
Target Start/End: Complemental strand, 18148301 - 18148205
Alignment:
Q  320 aaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccaccacaaa 416  Q
    |||||||||| |||| |||||||| | ||||| ||| |||||||||||||||||||||||||||||  ||   || |||||||||| ||||||||||    
T  18148301 aaaaagctagccgatacccaaacacataagtgagcttgaccaccacaaatgagtaccgaaaacaaaggtagcgttactagctttcaaccaccacaaa 18148205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 19255678 - 19255630
Alignment:
Q  328 agtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtacc 376  Q
    |||| |||||||||||| |||| |||||||||||||| | |||||||||    
T  19255678 agtcaatgcccaaacatgaaagcgggctcgaccaccaaatatgagtacc 19255630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 364
Target Start/End: Complemental strand, 26019532 - 26019496
Alignment:
Q  328 agtcgatgcccaaacataaaagtgggctcgaccacca 364  Q
    |||||||||||| |||||||||||| |||||||||||    
T  26019532 agtcgatgcccatacataaaagtggactcgaccacca 26019496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 27167655 - 27167611
Alignment:
Q  320 aaaaagctagtcgatgcccaaacataaaagtgggctcgaccacca 364  Q
    |||||||||||||||||||| |||||| || ||||| ||||||||    
T  27167655 aaaaagctagtcgatgcccatacataagagagggctagaccacca 27167611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 416
Target Start/End: Original strand, 39073407 - 39073466
Alignment:
Q  357 gaccaccacaaatgagtaccgaaaacaaaattaatcttg-ctagctttcagccaccacaaa 416  Q
    ||||||||||| | |||||| ||||||||| ||| |||| |||||||||||||||||||||    
T  39073407 gaccaccacaactaagtaccaaaaacaaaagtaa-cttgtctagctttcagccaccacaaa 39073466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 364
Target Start/End: Original strand, 42927724 - 42927752
Alignment:
Q  336 cccaaacataaaagtgggctcgaccacca 364  Q
    |||||||||||||||||||||||||||||    
T  42927724 cccaaacataaaagtgggctcgaccacca 42927752  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 44472935 - 44472991
Alignment:
Q  320 aaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtacc 376  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||||    
T  44472935 aaaaaactagtcgatgcccaaacacaaaagagggctcgaccaccacgaatgagtacc 44472991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 412
Target Start/End: Original strand, 7708836 - 7708915
Alignment:
Q  333 atgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccacca 412  Q
    ||||||||||| || || |||||||||||||||| |||| |||| |||||||||||||  ||  ||||||| ||||||||    
T  7708836 atgcccaaacacaagagcgggctcgaccaccacatatgaataccaaaaacaaaattaactttcttagctttaagccacca 7708915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 26317625 - 26317580
Alignment:
Q  345 aaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaa 390  Q
    ||||||||||||||||||||||||||| || | |||||||||||||    
T  26317625 aaaagtgggctcgaccaccacaaatgaatagcaaaaacaaaattaa 26317580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 37444722 - 37444783
Alignment:
Q  325 gctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaa 386  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||| || |||| ||||    
T  37444722 gctagtcgatgcccaaacacaacagggggctcgaccatcacaaatgagtgccaaaaataaaa 37444783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 364
Target Start/End: Complemental strand, 17765514 - 17765481
Alignment:
Q  331 cgatgcccaaacataaaagtgggctcgaccacca 364  Q
    ||||||||| ||||||||||||||||||||||||    
T  17765514 cgatgcccatacataaaagtgggctcgaccacca 17765481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 20240047 - 20240003
Alignment:
Q  320 aaaaagctagtcgatgcccaaacataaaagtgggctcgaccacca 364  Q
    ||||||||||||||||| || ||| ||||| ||||||||||||||    
T  20240047 aaaaagctagtcgatgctcatacacaaaagagggctcgaccacca 20240003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 20240141 - 20240077
Alignment:
Q  255 aaaatgaattatattaacactgacaacgcaatcgcctcagcacaaggcgtgacaaagcaattacg 319  Q
    ||||||||||||||||||||||||| || ||| || | |||| |||||||  |||| ||||||||    
T  20240141 aaaatgaattatattaacactgacagcgtaattgctttagcataaggcgtaccaaaacaattacg 20240077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 42245905 - 42245977
Alignment:
Q  317 acgaaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaatta 389  Q
    ||||| ||| ||| |||| | |||||||| ||| || ||||||||| ||| ||||||||| ||||||||||||    
T  42245905 acgaacaagttagccgatacacaaacatataaggggactcgaccacaacatatgagtaccaaaaacaaaatta 42245977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 41309843 - 41309780
Alignment:
Q  175 gtgaagaagataatttttaggacattaaaacttttcttctggggtttacttttgcaaggtaaac 238  Q
    ||||||||||||||| | |||||||| |||||| |||| |||||| ||||||||||||||||||    
T  41309843 gtgaagaagataattctcaggacattgaaacttctcttttggggtatacttttgcaaggtaaac 41309780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 9895276 - 9895336
Alignment:
Q  327 tagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaat 387  Q
    ||||||||||||||||||||||| ||||||| |||||||| | || |||| ||||||||||    
T  9895276 tagtcgatgcccaaacataaaagcgggctcgtccaccacatacgaataccaaaaacaaaat 9895336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 41324545 - 41324478
Alignment:
Q  171 tgctgtgaagaagataatttttaggacattaaaacttttcttctggggtttacttttgcaaggtaaac 238  Q
    ||||||||| ||||||||  |||||||||| || ||| |||| |||||| |||| |||||||||||||    
T  41324545 tgctgtgaaaaagataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaac 41324478  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 38652501 - 38652447
Alignment:
Q  333 atgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaat 387  Q
    ||||||||||||| ||| |||||||||||||||| |||||| || |||| |||||    
T  38652501 atgcccaaacatacaagcgggctcgaccaccacatatgagtcccaaaaataaaat 38652447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 11277800 - 11277760
Alignment:
Q  336 cccaaacataaaagtgggctcgaccaccacaaatgagtacc 376  Q
    |||| |||||||||||||||||||||||||  |||||||||    
T  11277800 cccagacataaaagtgggctcgaccaccactgatgagtacc 11277760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 3731346 - 3731393
Alignment:
Q  253 ccaaaatgaattatattaacactgacaacgcaatcgcctcagcacaag 300  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||    
T  3731346 ccaaaatgaattatattaacactgacaacgcaattgcttcagcacaag 3731393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 33184916 - 33184984
Alignment:
Q  252 gccaaaatgaattatattaacactgacaacgcaatcgcctcagcacaaggcgtgacaaagcaattacgaa 321  Q
    |||||||||||||| ||||||||||||| |||||| || ||||||||||||||| |||| |||| |||||    
T  33184916 gccaaaatgaatta-attaacactgacatcgcaattgcttcagcacaaggcgtgccaaaacaatcacgaa 33184984  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 416
Target Start/End: Original strand, 33185013 - 33185109
Alignment:
Q  320 aaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccaccacaaa 416  Q
    ||||||||||| ||||| || ||| | |||||||||||||||||| |||||||||| |||| ||||  ||   || |||||||||| ||||||||||    
T  33185013 aaaaagctagttgatgcacacacacataagtgggctcgaccaccaaaaatgagtactgaaagcaaatgtagcattactagctttcaaccaccacaaa 33185109  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 10919711 - 10919768
Alignment:
Q  254 caaaatgaattatattaacactgacaacgcaatcgcctcagcacaaggcgtgacaaag 311  Q
    ||||||||||||||||||||||||||||| |||  | |||||||||| |||| |||||    
T  10919711 caaaatgaattatattaacactgacaacgtaattacttcagcacaagacgtgccaaag 10919768  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 15959370 - 15959333
Alignment:
Q  327 tagtcgatgcccaaacataaaagtgggctcgaccacca 364  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  15959370 tagtcgatgcccatacataaaagtgggctcgaccacca 15959333  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 366
Target Start/End: Complemental strand, 10587415 - 10587381
Alignment:
Q  332 gatgcccaaacataaaagtgggctcgaccaccaca 366  Q
    |||||||||||||| ||||||||||||||||||||    
T  10587415 gatgcccaaacatacaagtgggctcgaccaccaca 10587381  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 385
Target Start/End: Complemental strand, 45439434 - 45439370
Alignment:
Q  320 aaaaagctagtcgatgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaa 385  Q
    |||||||||| ||||||||||||| | |||||||||||||| |||| |||||||||| ||||||||    
T  45439434 aaaaagctagccgatgcccaaacacacaagtgggctcgaccgccac-aatgagtaccaaaaacaaa 45439370  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 386
Target Start/End: Complemental strand, 9594729 - 9594695
Alignment:
Q  352 ggctcgaccaccacaaatgagtaccgaaaacaaaa 386  Q
    |||||||||||||||||||||| ||||||||||||    
T  9594729 ggctcgaccaccacaaatgagtgccgaaaacaaaa 9594695  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 13395981 - 13396021
Alignment:
Q  336 cccaaacataaaagtgggctcgaccaccacaaatgagtacc 376  Q
    |||||||||||||| |||||||||||||||  |||||||||    
T  13395981 cccaaacataaaagcgggctcgaccaccactgatgagtacc 13396021  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 18257709 - 18257649
Alignment:
Q  255 aaaatgaattatattaacactgacaacgcaatcgcctcagcacaaggcgtgacaaagcaat 315  Q
    ||||| |||| ||||||||||||| ||| ||| || ||||||||||||||| |||| ||||    
T  18257709 aaaataaattgtattaacactgactacgtaattgcttcagcacaaggcgtgccaaaacaat 18257649  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 41665916 - 41665876
Alignment:
Q  336 cccaaacataaaagtgggctcgaccaccacaaatgagtacc 376  Q
    |||||||||||||| |||||||||||||||  |||||||||    
T  41665916 cccaaacataaaagcgggctcgaccaccactgatgagtacc 41665876  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 43845595 - 43845535
Alignment:
Q  358 accaccacaaatgagtaccgaaaacaaaattaatcttgctagctttcagccaccacaaaaa 418  Q
    ||||||||| ||||||||| |||||||||  ||  |  |||||||||||||||||||||||    
T  43845595 accaccacacatgagtaccaaaaacaaaagaaacatgcctagctttcagccaccacaaaaa 43845535  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 2187028 - 2187081
Alignment:
Q  333 atgcccaaacataaaagtgggctcgaccaccacaaatgagtaccgaaaacaaaa 386  Q
    ||||||||||| | ||| |||||||||||||||| |||||| || |||||||||    
T  2187028 atgcccaaacaaacaagcgggctcgaccaccacatatgagtcccaaaaacaaaa 2187081  T

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