View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9331_low_12 (Length: 437)
Name: NF9331_low_12
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 421
Target Start/End: Original strand, 13910985 - 13911398
Alignment:
| Q |
7 |
ggagcagagagcataaagatgttagttgttggaatttatcgatacataaaagagaaattgggaccgaaaaagggcatcacaatatattcaataagactaa |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13910985 |
ggagcagaaagcataaagatgttagttgttggaatttatcgatacataaaagagaaattgggaccgaaaaagggcatcacaatatattcaataagactaa |
13911084 |
T |
|
| Q |
107 |
atattcnnnnnnnccatttgaaggatgtgacatttgtatacattatcattcattcctagcaaccactatatgatagatgttaacattatattggcttagg |
206 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13911085 |
atattcaaaaaa-ccatttgaaggatgtgacatttatatacgttatcattcattcctagcaaccactatatgatagatgttaacattatattggcttagg |
13911183 |
T |
|
| Q |
207 |
aaggtatgaaatctaatcttatgagtttgatatatatgctaactgtcgacaagattttttgtgggtggttcccctcttgcatttggtgcaactagatttc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13911184 |
aaggtatgaaatctaatcttatgagtttgatatatatgctaactgtcgacaagattttttgtgggtggttcccctcttgcatttggtgcaactagatttc |
13911283 |
T |
|
| Q |
307 |
acatgtgtggttccattaatgtgagacaaattaaagaagcattaacacttaatagtgtctctaattaacacaacggcaagagcattacatccacataaac |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13911284 |
acatgtgtggttccattaatgtgagacaaattaaagaagcattaacacttaatagtatctctaattaacacaacggcaagagcattacatccacataaac |
13911383 |
T |
|
| Q |
407 |
aaaagcagtgataat |
421 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13911384 |
aaaagcagtgataat |
13911398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University