View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9331_low_15 (Length: 421)
Name: NF9331_low_15
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 41955291 - 41955690
Alignment:
| Q |
1 |
ttttataagaataagttaaacccaatataaaaatttaattcaatgttaaacatgaaaaaatattaatatacaagaaattactcccaaacatgannnnnnn |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
41955291 |
ttttataagaataagttaaatccaatataaaaatttaattcaatgttaaacacgaaaaa-tattaatatacaagaaattactcccaaacatgaatttttt |
41955389 |
T |
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| Q |
101 |
nnnnnn---acaagaccctcaagcatgatttacnnnnnnnaaggaaaaatatacatacccttaaatcatcattatagtgtagaaatagaaatacacgagt |
197 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41955390 |
ttattttttacaagatcctcaagcatgatttactttttttaaggaaaaatatacatacccttaaatcatcattatagtgtagaaatagaaatacacgaat |
41955489 |
T |
|
| Q |
198 |
tatcaaattaatttctgtatattatcgaagtatttatataaatgctaaataatatactttacacttaagaactttacttgaagatgcatgctctcaacca |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41955490 |
tatcaaattaatttctgtatattatcgaagtatttatataaatgctacataatatactttacacttaagaactttacttgaagatgcatgctctcaacca |
41955589 |
T |
|
| Q |
298 |
gaaacaaaaatattctcgcccatccaatagtccccactctatttcacatctcattcatcctttcccctatttgtgtatgtcttattagccaggttcacca |
397 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41955590 |
gaaacaaaaatattcttgcccatccaatagtccccactctatttca-----cattcatcctttcccctatttgtgtatgtcttattagccaggttcacca |
41955684 |
T |
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