View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9331_low_18 (Length: 377)
Name: NF9331_low_18
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 46920362 - 46920710
Alignment:
| Q |
18 |
aaaacatgagaagtcaacatcgctgcatgagaactgatgcaattcgtaccaaaatccaaataaacgctcatacaccatttaaccttaacatcatcnnnnn |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920362 |
aaaacatgagaagtcaacatcgctgcatgagaactgatgcaattcgtaccaaaatccaaataaacgctcatacaccatttaaccttaacatcatcaaaaa |
46920461 |
T |
|
| Q |
118 |
nncacaatgaacatacatcctcaaaacctactaggtagtttactcgaatcagctgtttcaacacattgttccatcttaggtcgtaccatccatgcacaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920462 |
a-cacaatgaacatacatcctcaaaacctactaggttgtttactcgaatcagctgtttcaacacattgttccatcttaggtcgtaccatccatgcacaca |
46920560 |
T |
|
| Q |
218 |
tcattcgcacacatgtcaccccactcccatctttcctctccaaccacctcgtcaacatgtactccaaactcgaccttcttaactcagctcaacacgttct |
317 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920561 |
tcattcgcacacatgtcaccccacttccatctttcctctccaaccacctcgtcaacatgtactccaaactcgaccttcttaactcagctcaacacgttct |
46920660 |
T |
|
| Q |
318 |
ctcactcactcacctccgcaccgttgttacttggacctctcttatctctg |
367 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920661 |
ctcattcactcacctccgcaccgttgttacttggacctctcttatctctg |
46920710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 66 - 367
Target Start/End: Original strand, 38310567 - 38310867
Alignment:
| Q |
66 |
ccaaaatccaaataaacgctcatacaccatttaaccttaacatcatcnnnnnnncacaatgaacatacatcctcaaaacctactaggtagtttactcgaa |
165 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38310567 |
ccaaaatccaaataaaccctcatacaccatttaaccttaacatcatcaaaaaa-cacaatgaacatacatcctcaaaacctactaggtagtttactcgaa |
38310665 |
T |
|
| Q |
166 |
tcagctgtttcaacacattgttccatcttaggtcgtaccatccatgcacacatcattcgcacacatgtcaccccactcccatctttcctctccaaccacc |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38310666 |
tcagctgtttcaacacattgttccatcttaggtcgtaccatccatgcacacatcattcgcacacatgtcaccccactcccatctttcctctccaaccacc |
38310765 |
T |
|
| Q |
266 |
tcgtcaacatgtactccaaactcgaccttcttaactcagctcaacacgttctctcactcactcacctccgcaccgttgttacttggacctctcttatctc |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38310766 |
tcgtcaacatgtactccaaactcgaccttcttaactcagctcaacacgttctctcactcactcacctccgcaccgttgttacttggacctctcttatctc |
38310865 |
T |
|
| Q |
366 |
tg |
367 |
Q |
| |
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|| |
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|
| T |
38310866 |
tg |
38310867 |
T |
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