View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9331_low_2 (Length: 698)
Name: NF9331_low_2
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 654; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 9 - 682
Target Start/End: Original strand, 9415782 - 9416455
Alignment:
| Q |
9 |
ataatactgccccggtatttcaacattaaggaaactatgacaggaacaaaggagaccacatcaacataaacattcagttttgtgctttgaacccggaaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9415782 |
ataatactgccccggtatttcaacattaaggaaactttgacaggaacaaaggagaccacatcaacataaacattcagttttgtgctttgaacccggaaat |
9415881 |
T |
|
| Q |
109 |
agtcctagtaaagggtatgatgtaaagtttatgattttgtctttgattctgattacggactcagaagcatattatgcgttttagtttatgcagtaacatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9415882 |
agtcctagtaaagggtatgatgtaaagtttatgattttgtctttgattctgattacggactcagaagcatattatgcgttttagtttatgcagtaacatt |
9415981 |
T |
|
| Q |
209 |
aaaaacacatgtgcaggctctttactcatccaaatacatgagataaagctatcacaaatcattgtaatcagatatgtacagcacaatcaagacttgatag |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9415982 |
aaaaacacatgtgcaggctctttactcatccaaatacatgagataaagctatcacaaataattgtaatcagatatgtacagcacaatcaagacttgatag |
9416081 |
T |
|
| Q |
309 |
ctgaaaaagccaaggatgacaagaaacacttgcatcaacaaattaaaatttatcaaacatgtacagtgataaagtaaattaaataaagggtgagaataat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9416082 |
ctgaaaaagccaaggatgacaagaaacacttgcatcaacaaattaaaatttatcaaacatgtacagtgataaagtaaattaaataaagggtgagaataat |
9416181 |
T |
|
| Q |
409 |
caaatagaaattatattaagaggaaaggaggaagtcacttaaatactgcaccaaatatttgaagtgagatttagacacctaatttgcactgcatgcatca |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9416182 |
caaatagaaattatattaagaggaaaggagtaagtcacttaaatactgcaccaaatatttgaagtgagatttagacacctaatttgcactgcaagcatca |
9416281 |
T |
|
| Q |
509 |
gtccccggtctaataacataaacgaagcacaataatgcaaatatcacaagcacataacaaacctttcaatgcaagataacatactcatttacgaattcaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9416282 |
gtccccggtctaataacataaacgaagcacaataatgcaaatatcacaagcacataacaaacctttcaatgcaagatagcatactcatttacgaattcaa |
9416381 |
T |
|
| Q |
609 |
ttaacttttgactatccattcaggtgccgagaacaagctgagatattccaaaccatcagacacatagttaaaac |
682 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9416382 |
ttaacttttgactatccattcaggtgccgagaacaagctgagatattccaaaccatcagacacatagttaaaac |
9416455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 97 - 489
Target Start/End: Complemental strand, 9442637 - 9442250
Alignment:
| Q |
97 |
gaacccggaaatagtcctagtaaagggtatgatgtaaagtttatgattttgtctttgattctgattacggactcagaagcatattatgcgttttagttta |
196 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| ||||||| |||| |
|
|
| T |
9442637 |
gaacccagaaatagtcctagtaaagggtatgatgtaaagtttaagattttgactttgattctgatta--gactcagaagcatattatacgttttaattta |
9442540 |
T |
|
| Q |
197 |
tgcagtaacattaaaaacacatgtgcaggctctttactcatccaaatacatgagataaagctatcacaaatcattgtaatcagatatgtacagcacaatc |
296 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||| |
|
|
| T |
9442539 |
tgcagtaacattaaaaacacatatgcaggctctttactcgtcctaatacatgagataaagctatcccaaatcactgtcatcagatatgtac-gcacaatc |
9442441 |
T |
|
| Q |
297 |
aagacttgatagctgaaaaagccaaggatgacaagaaacacttgcatcaacaaattaaaatttatcaaacatgtacagtgataaagtaaattaaataaag |
396 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||| | |
|
|
| T |
9442440 |
aagacttgatagctgaaagaaccaaggatgacaagaaacacttgcattaacaagttaaaatttatcaaaca--tatagtgataaagtaaattaaataatg |
9442343 |
T |
|
| Q |
397 |
ggtgagaataatcaaatagaaattatattaagaggaaaggaggaagtcacttaaatactgcaccaaatatttgaagtgagatttagacaccta |
489 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
9442342 |
tgtgagaacaatcaattagaaattatattaagaggaaaggagtaagtcactaaaatactgcaccaaatattcgatgtgagatttagacaccta |
9442250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 552 - 682
Target Start/End: Complemental strand, 9442143 - 9442012
Alignment:
| Q |
552 |
tcacaagcaca-taacaaacctttcaatgcaagataacatactcatttacgaattcaattaacttttgactatccattcaggtgccgagaacaagctgag |
650 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442143 |
tcacaagcacaataagaaacctttcaatgcaagataacatactcatttacgatttcaattaacttttgactatccattcaggtgccgagaacaagctgag |
9442044 |
T |
|
| Q |
651 |
atattccaaaccatcagacacatagttaaaac |
682 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| |
|
|
| T |
9442043 |
atattccaaaccatcaggcacatgcttaaaac |
9442012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 496 - 656
Target Start/End: Original strand, 9425299 - 9425459
Alignment:
| Q |
496 |
actgcatgcatcagtccccggtctaataacataaacgaagcacaataatgcaaatatcacaagcacataacaaacctttcaatgcaagataacatactca |
595 |
Q |
| |
|
|||||||||||| ||| || ||||||||| || || |||||||||||||||||||||| ||||| |||| |||| ||| ||||||||||||||||||| |
|
|
| T |
9425299 |
actgcatgcatcggtctccagtctaataatattcactaagcacaataatgcaaatatcagaagcaaataagaaacttttgaatgcaagataacatactct |
9425398 |
T |
|
| Q |
596 |
tttacgaattcaattaacttttgactatccattcaggtgccgagaacaagctgagatattc |
656 |
Q |
| |
|
|||||||||||||||||||||| | ||||| || |||||||||||||||||||| ||||| |
|
|
| T |
9425399 |
gttacgaattcaattaacttttgccgatccactccggtgccgagaacaagctgaggtattc |
9425459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 486 - 656
Target Start/End: Original strand, 9397514 - 9397680
Alignment:
| Q |
486 |
cctaatttgcactgcatgcatcagtccccggtctaataacataaacgaagcacaataatgcaaatatcacaagcacataacaaacctttcaatgcaagat |
585 |
Q |
| |
|
||||||||||||||| |||||| | ||||||| ||||||||| ||| ||||| |||||||||| |||||||||||||||| |||||| || ||| || |
|
|
| T |
9397514 |
cctaatttgcactgcttgcatcggcccccggtataataacattaactaagcagaataatgcaagtatcacaagcacataagaaacct----attcaaaat |
9397609 |
T |
|
| Q |
586 |
aacatactcatttacgaattcaattaacttttgactatccattcaggtgccgagaacaagctgagatattc |
656 |
Q |
| |
|
| ||||||| ||| |||||||||||||||||||| ||||| || ||| |||||||||||||||||||||| |
|
|
| T |
9397610 |
agcatactccgttatgaattcaattaacttttgacaatccactccggttccgagaacaagctgagatattc |
9397680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 517 - 656
Target Start/End: Original strand, 9407123 - 9407261
Alignment:
| Q |
517 |
tctaataacataaacgaagcacaataatgcaaatatcacaagcacataacaaacctttcaatgcaagataacatactcatttacgaattcaattaacttt |
616 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| ||||| |||| |||| || ||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
9407123 |
tctaataacattaactaagcacaataatgcaaatatcagaagcaaataagaaactattgaatgcaagataacatactctgttacg-attcaattaacttt |
9407221 |
T |
|
| Q |
617 |
tgactatccattcaggtgccgagaacaagctgagatattc |
656 |
Q |
| |
|
|||| ||||| || ||||||||||| |||||||||||||| |
|
|
| T |
9407222 |
tgacaatccactccggtgccgagaataagctgagatattc |
9407261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 318 - 419
Target Start/End: Original strand, 9424612 - 9424713
Alignment:
| Q |
318 |
ccaaggatgacaagaaacacttgcatcaacaaattaaaatttatcaaacatgtacagtgataaagtaaattaaataaagggtgagaataatcaaatagaa |
417 |
Q |
| |
|
|||||||| | ||||||||||||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
9424612 |
ccaaggattataagaaacacttgcattatcaaattaaaatttatcaaacatctacggtgataaagtaaattaaataaagtgtgagaataatcaattagaa |
9424711 |
T |
|
| Q |
418 |
at |
419 |
Q |
| |
|
|| |
|
|
| T |
9424712 |
at |
9424713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 9442751 - 9442660
Alignment:
| Q |
9 |
ataatactgccccggtatttcaacattaaggaaactatgacaggaacaaaggagaccacatcaacat-aaacattcagttttgtgctttgaa |
99 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
9442751 |
ataatactgcctcgatatttcaacattaaggaaactatgacaggtacaaaggagaccacatcaatataaaacattcagttttgtgctttgaa |
9442660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 318 - 419
Target Start/End: Original strand, 9406382 - 9406483
Alignment:
| Q |
318 |
ccaaggatgacaagaaacacttgcatcaacaaattaaaatttatcaaacatgtacagtgataaagtaaattaaataaagggtgagaataatcaaatagaa |
417 |
Q |
| |
|
|||||||| | ||||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
9406382 |
ccaaggattataagaaacacttgcattaacaaattaaaatttatccaacatctatgatgataaagtaaattaaataaagtgtgagaataatcaattagaa |
9406481 |
T |
|
| Q |
418 |
at |
419 |
Q |
| |
|
|| |
|
|
| T |
9406482 |
at |
9406483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 517 - 595
Target Start/End: Complemental strand, 9626844 - 9626767
Alignment:
| Q |
517 |
tctaataacataaacgaagcacaataatgcaaatatcacaagcacataacaaacctttcaatgcaagataacatactca |
595 |
Q |
| |
|
||||| |||||||| |||||||||||||||| ||| |||| ||||| | ||||||||||||| | ||||||||||||| |
|
|
| T |
9626844 |
tctaacaacataaattaagcacaataatgcaa-tatgacaatcacattagaaacctttcaatgtaggataacatactca |
9626767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 9627660 - 9627590
Alignment:
| Q |
240 |
aaatacatgagataaagctatcacaaatcattgtaatcagatatgtacagcacaatcaagacttgatagct |
310 |
Q |
| |
|
||||||||||| | |||| ||||||||| ||||| |||||||| |||| |||||||||| ||||||||| |
|
|
| T |
9627660 |
aaatacatgaggtcaagcgatcacaaattattgtgatcagataggtacttaacaatcaagatttgatagct |
9627590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 419
Target Start/End: Complemental strand, 9647408 - 9647302
Alignment:
| Q |
318 |
ccaaggatgacaagaaacactt----gcatcaacaaattaaaatttatcaaacatgtacagtga-taaagtaaattaaataaagggtgagaataatcaaa |
412 |
Q |
| |
|
|||||||| |||||||| |||| |||| |||| || |||||||||||||||||| |||||| ||||| || |||||||| ||||||||||| | | |
|
|
| T |
9647408 |
ccaaggataacaagaaagacttaatagcattaacagataaaaatttatcaaacatgtgcagtgagaaaagtcaagaaaataaagagtgagaataataata |
9647309 |
T |
|
| Q |
413 |
tagaaat |
419 |
Q |
| |
|
||||||| |
|
|
| T |
9647308 |
tagaaat |
9647302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 569 - 607
Target Start/End: Complemental strand, 213391 - 213353
Alignment:
| Q |
569 |
acctttcaatgcaagataacatactcatttacgaattca |
607 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
213391 |
acctttcaatgcaagataacatactcacttacgaattca |
213353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 592
Target Start/End: Complemental strand, 8814736 - 8814661
Alignment:
| Q |
516 |
gtctaataacataaacgaagcacaataatgcaaatatcacaagcacataacaaacctttcaatgcaagataacatac |
592 |
Q |
| |
|
|||||| |||| |||| ||||||||| | || | |||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
8814736 |
gtctaacaacaaaaactaagcacaatgaagcta-tatcacaatcacattagaaacctttcaatgcaagataacatac |
8814661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 516 - 593
Target Start/End: Complemental strand, 251756 - 251678
Alignment:
| Q |
516 |
gtctaataacataaacgaagcacaataatgcaa-atatcacaagcacataacaaacctttcaatgcaagataacatact |
593 |
Q |
| |
|
|||||| |||| |||| ||||||||||| || | |||| |||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
251756 |
gtctaacaacaaaaacaaagcacaataaagctatatatgacaatgacattagaaacctttcaatgcaagataacatact |
251678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 235017 - 235057
Alignment:
| Q |
567 |
aaacctttcaatgcaagataacatactcatttacgaattca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
235017 |
aaacctttcaatgcaagataacatactctgttactaattca |
235057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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