View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9331_low_21 (Length: 356)
Name: NF9331_low_21
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 136 - 346
Target Start/End: Original strand, 44641348 - 44641554
Alignment:
| Q |
136 |
cattagtgaaaaaggtacattgggggttacgaaaatcaacaagggcaaaccataatgcaatcattgtcactaacagtataaattgcaattagaaatggac |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44641348 |
cattagtgaaaaaggtacattgggggttacgaaaatcaacaagggcaaaccataatgcaatcattgtcactaacagtataaattgcaattagaaatggac |
44641447 |
T |
|
| Q |
236 |
accaacatatattttcgaaaatacagaaaaagattaaagatacacacaccttcagcaccaatgtatacatagctcaataacctttacaaaacaatctcgt |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44641448 |
accaacatatattttcgaaaatacagaaaaagattaaagat----acaccttcagcaccaatgtatacatagctcaataacctttacaaaacaatctcgt |
44641543 |
T |
|
| Q |
336 |
gccgtctctct |
346 |
Q |
| |
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|||| |||||| |
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| T |
44641544 |
gccgcctctct |
44641554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 44641145 - 44641280
Alignment:
| Q |
2 |
gctttttattgacccacccacagtttgtgtttgtgaaccgacttgtacatacacttcttttgttgttttgcagagactaagacagcaaaaccgaacaacg |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44641145 |
gctttttattgacccacccacagtttgtgtttgtgaaccgacttgtacatacacttcttttgttgttttgcagagactaagacagcaaaaccgaacaacg |
44641244 |
T |
|
| Q |
102 |
aacatgtaagtacttcttcattcttcccttgcaaca |
137 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
44641245 |
aacatgtaagtacttcttcattcttcccttgcaaca |
44641280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 158 - 329
Target Start/End: Original strand, 44666840 - 44667006
Alignment:
| Q |
158 |
ggggttacgaaaatcaacaagggcaaaccataatgcaatcattgtcactaacagtataaattgcaattagaaatggacaccaacatatattttcgaaaat |
257 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44666840 |
ggggttacaaaaatcaataagggcaaaccataatgcaatcattgtcattaatagtataaattgcaattagaaatggacaccaacatatattttcaaaaat |
44666939 |
T |
|
| Q |
258 |
acagaaaaagattaaagatacacacaccttcagcaccaatgtatacatagctcaat-aacctttacaaaacaa |
329 |
Q |
| |
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| || ||||||||||||| ||||||||||||||| ||||||| |||||||| ||| |||||||||||| |
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| T |
44666940 |
aaag--aaagattaaagat----acaccttcagcaccacggtatacacagctcaataaacttttacaaaacaa |
44667006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 158 - 329
Target Start/End: Original strand, 44686164 - 44686330
Alignment:
| Q |
158 |
ggggttacgaaaatcaacaagggcaaaccataatgcaatcattgtcactaacagtataaattgcaattagaaatggacaccaacatatattttcgaaaat |
257 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44686164 |
ggggttacaaaaatcaataagggcaaaccataatgcaatcattgtcattaatagtataaattgcaattagaaatggacaccaacatatattttcaaaaat |
44686263 |
T |
|
| Q |
258 |
acagaaaaagattaaagatacacacaccttcagcaccaatgtatacatagctcaat-aacctttacaaaacaa |
329 |
Q |
| |
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| || ||||||||||||| ||||||||||||||| ||||||| |||||||| ||| |||||||||||| |
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| T |
44686264 |
aaag--aaagattaaagat----acaccttcagcaccacggtatacacagctcaataaacttttacaaaacaa |
44686330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 329
Target Start/End: Original strand, 45568615 - 45568745
Alignment:
| Q |
195 |
atcattgtcactaacagtataaattgcaattagaaatggacaccaacatatattttcgaaaatacagaaaaagattaaagatacacacaccttcagcacc |
294 |
Q |
| |
|
|||||||| | ||| || |||||||||||||||||||| ||| |||||| |||||| ||||||||||||||||||||||||||||| | ||||||| |
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| T |
45568615 |
atcattgttattaatagcataaattgcaattagaaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagatacaca----tgcagcacc |
45568710 |
T |
|
| Q |
295 |
aatgtatacatagctcaataacctttacaaaacaa |
329 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
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|
| T |
45568711 |
ggtgtatacatagctcaataacttttacaaaacaa |
45568745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 193 - 329
Target Start/End: Original strand, 45093922 - 45094054
Alignment:
| Q |
193 |
caatcattgtcactaacagtataaattgcaattagaaatggacaccaacatatattttcgaaaatacagaaaaagattaaagatacacacaccttcagca |
292 |
Q |
| |
|
|||||||||| | ||| || |||||||||||||||||||| | |||||||| ||||||| |||||||||||||||||||||||||| || | || | |
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| T |
45093922 |
caatcattgttattaatagcataaattgcaattagaaatgaagaccaacatctattttcaaaaatacagaaaaagattaaagataccca----tgcaaaa |
45094017 |
T |
|
| Q |
293 |
ccaatgtatacatagctcaataacctttacaaaacaa |
329 |
Q |
| |
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||| ||||||||||||||||| || ||| |||||||| |
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| T |
45094018 |
ccagtgtatacatagctcaatgactttttcaaaacaa |
45094054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 44680439 - 44680510
Alignment:
| Q |
56 |
ttcttttgttgttttgcagagactaagacagcaaaaccgaacaacgaacatgtaagtacttcttcattcttccctt |
131 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
44680439 |
ttcttttgttgttttgcagaga----gacagccaaaccaaacaacgaacgtgtaagtacttcttcattcttccctt |
44680510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 329
Target Start/End: Original strand, 45103093 - 45103200
Alignment:
| Q |
228 |
aaatggacaccaacatatattttcgaaaatacagaaaaagattaaa---gataca-cacaccttcagcaccaatgtata--catagctcaataaccttta |
321 |
Q |
| |
|
||||||||| ||||| | ||||| |||||||| |||||||||||| ||||| ||||| | ||||||||||||||| |||||||||||||||||| |
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|
| T |
45103093 |
aaatggacatcaacacagattttaaaaaatacataaaaagattaaacatgatactgcacacatgcagcaccaatgtatatacatagctcaataacctttg |
45103192 |
T |
|
| Q |
322 |
caaaacaa |
329 |
Q |
| |
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|||||||| |
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|
| T |
45103193 |
caaaacaa |
45103200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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