View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9331_low_28 (Length: 311)

Name: NF9331_low_28
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9331_low_28
NF9331_low_28
[»] chr2 (1 HSPs)
chr2 (19-311)||(3089368-3089657)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 3089657 - 3089368
Alignment:
Q  19 gaatatgccaaattgatgctaatatatatgcaagtattgtgaacctcacacaaattagtcatggaggttctatttcacaaattttctgtttagcttaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  3089657 gaatatgccaaattgatgctaatatatatgcaagtattgtgaacctcacacaaattagtcatggaggttgtatttcacaaattttctgtttagcttaagg 3089558  T
Q  119 accaaaagaattatttgttgtgtcctttaaagcaaatgttttagaaatagtagccaattaaaccgattgaacagggaactgactagtttctccgttggtt 218  Q
    |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  3089557 accaaaa---ttatttgttgtgtcctttaaagcaaatgttttagaaatagtagccaattaaaccggttgaacagggaactgactggtttctccgttggtt 3089461  T
Q  219 tgatctcggttagacaatcacattgcagtatgattgaaccggttcaaccacggttggttcaatatattttcatttttatccattttaatactt 311  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3089460 tgatctcggttagacaattacattgcagtatgattgaaccgtttcaaccacggttggttcaatatattttcatttttatccattttaatactt 3089368  T

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