View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9331_low_38 (Length: 300)
Name: NF9331_low_38
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 279
Target Start/End: Complemental strand, 1747227 - 1746978
Alignment:
| Q |
22 |
atttattagcggtgtcggcgtgtaagtgttcggtgtccttgcttcattgattgaaactagnnnnnnnctttgaaaatgccaacttagattttctgtattt |
121 |
Q |
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| T |
1747227 |
atttattagcggtgtcggcgtgtaagtgctcggtgtccttgcttcattgattgaaactagtttttttctttgaaaatgccaacttag--------tattt |
1747136 |
T |
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| Q |
122 |
gattattactctatgcaccataatttcctagtaatcttgtatgttaagatttttatataatgtgcaatataatgcaattagttatgtgttatacaaagtt |
221 |
Q |
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| T |
1747135 |
gattattactctatgcaccataatttcctagtaatcttgtatggtaagatttttatataaggtgcaatataatgcaattagttatgtgttatacaaagtt |
1747036 |
T |
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| Q |
222 |
ataaattacattgtttttctttgctttcccttgaattgtatcatctggatttgattat |
279 |
Q |
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| T |
1747035 |
ataaattacattgtttttctttgctttcccttgaattgtatcatctggatttgattat |
1746978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 277
Target Start/End: Complemental strand, 6006005 - 6005818
Alignment:
| Q |
89 |
ctttgaaaatgccaacttagattttctgtatttgattattactctatgcaccataatttcctagtaatcttgtatgttaagatttttatataatgtgcaa |
188 |
Q |
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| T |
6006005 |
ctttgaaaatgtcaacttagatttgttgtatatgtttgtcaccctgtgcatcataattgccaattaattgtgtatggtaacatatttatataatgcacaa |
6005906 |
T |
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| Q |
189 |
tataatgcaattagttatgtgttatacaaagttataaattacattgtttttctttgctttcccttgaattgtatcatctggatttgatt |
277 |
Q |
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| T |
6005905 |
tgtaatataacaagttgggtgttatacatcgttttaaattatatagtttt-cttcactttcccttgaattatatcatctggacttgatt |
6005818 |
T |
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