View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9331_low_39 (Length: 298)
Name: NF9331_low_39
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 164 - 293
Target Start/End: Original strand, 2652984 - 2653113
Alignment:
| Q |
164 |
tacattcacatttctcattagactcaaaagaaactcacctacaattccatttgagaagtccactacccagttagttagcatctaactcactcattcactt |
263 |
Q |
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| T |
2652984 |
tacattcacatttctcattagactcaaaagaaactcacctacaattccatttgagaagtccactacccagttagttagcatctaactcactcattcactt |
2653083 |
T |
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| Q |
264 |
gatgatgaatgatttcttcaaaactccaaa |
293 |
Q |
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| T |
2653084 |
gatgatgaatgatttcttcaaaactccaaa |
2653113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 2652838 - 2652953
Alignment:
| Q |
18 |
tgatgcacaaacatcacatcaaacaatcgctaagaacattaaatattaacaaagtcactaattaattccttcaaaatagaactacaaaggaacgattaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
2652838 |
tgatgcacaaacatcacatcaaacaatcgctaagaacattaaatattaacaaagtcactaattaattccttcaaagtagaactacaaaggaacaattaaa |
2652937 |
T |
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| Q |
118 |
cataaaatttgttcat |
133 |
Q |
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| T |
2652938 |
cataaaatttgttcat |
2652953 |
T |
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