View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9331_low_4 (Length: 488)

Name: NF9331_low_4
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9331_low_4
NF9331_low_4
[»] chr3 (9 HSPs)
chr3 (19-472)||(47404688-47405143)
chr3 (19-53)||(46349485-46349519)
chr3 (21-54)||(14955928-14955961)
chr3 (19-51)||(11869553-11869585)
chr3 (21-53)||(22141214-22141246)
chr3 (21-53)||(24775156-24775188)
chr3 (21-53)||(33583732-33583764)
chr3 (21-53)||(33591221-33591253)
chr3 (21-53)||(33598352-33598384)
[»] chr7 (3 HSPs)
chr7 (21-55)||(23390686-23390720)
chr7 (19-53)||(33606151-33606185)
chr7 (21-53)||(16111541-16111573)
[»] chr5 (2 HSPs)
chr5 (21-55)||(4887473-4887507)
chr5 (21-53)||(5430328-5430360)
[»] chr2 (3 HSPs)
chr2 (21-55)||(31800483-31800517)
chr2 (21-54)||(6392983-6393016)
chr2 (21-53)||(28711316-28711348)
[»] chr6 (4 HSPs)
chr6 (21-54)||(17381901-17381934)
chr6 (21-53)||(7618057-7618089)
chr6 (21-53)||(15955158-15955190)
chr6 (21-53)||(16877686-16877718)
[»] chr1 (1 HSPs)
chr1 (21-54)||(25448110-25448143)
[»] chr8 (5 HSPs)
chr8 (21-53)||(15335698-15335730)
chr8 (21-53)||(15424763-15424795)
chr8 (21-53)||(15516067-15516099)
chr8 (21-53)||(24551760-24551792)
chr8 (21-53)||(24832710-24832742)
[»] chr4 (4 HSPs)
chr4 (19-55)||(10693316-10693352)
chr4 (19-55)||(10907082-10907118)
chr4 (21-53)||(29121838-29121870)
chr4 (21-53)||(55732258-55732290)


Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 47405143 - 47404688
Alignment:
Q  19 tcaagggttaatgttacacacattttgttccaacatatttacatacaagta--acacgtattactacacttgtttctcttaattatatgcttcttgttat 116  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||  |||| |||||| |||||||||| ||||||||||||||||||||||||    
T  47405143 tcaagggttaatgttacacacattttgttccaacatattcacatacaagtataacacctattaccacacttgtttatcttaattatatgcttcttgttat 47405044  T
Q  117 atgttcattaaggaacaatcgtgctcaattttcttgtctaaagataagtagatttcttatagctttgagttttcaagaaccaccaaatcttttgctatgg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47405043 atgttcattaaggaacaatcgtgctcaattttcttgtctaaagataagtagatttcttatagcttcgagttttcaagaaccaccaaatcttttgctatgg 47404944  T
Q  217 tcgaccaaactcaaacgtatgagatttagatctaagttctcaagaacctccaaatcttttgctataatcgaccaacctcaaatgcatgaactttagcttt 316  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47404943 tcgaccaaactcaaacgtatgagatttagatttaagttctcaagaacctccaaatcttttgctataatcgaccaacctcaaatgcatgaactttagcttt 47404844  T
Q  317 aagttcccaggaacaatctacaccaaccttgtatgagctttccatgtgtaacttctcgggtactcatcttgcactcaagaaaccaggacatagcagtaaa 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47404843 aagttcccaggaacaatctacaccaaccttgtatgagctttccatgtgtaacttctcgggtactcatcttgcactcaagataccaggacatagcagtaaa 47404744  T
Q  417 ccttaacctgtaggaaattacacttggttattagtgattgatttgtttgcagaaat 472  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47404743 ccttaacctgtaggaaattacacttggttgttagtgattgatttgtttgcagaaat 47404688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 46349519 - 46349485
Alignment:
Q  19 tcaagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||||| ||||||||||||||||||    
T  46349519 tcaagggttaatgttaaacacattttgttccaaca 46349485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 14955928 - 14955961
Alignment:
Q  21 aagggttaatgttacacacattttgttccaacat 54  Q
    |||||||||||||| |||||||||||||||||||    
T  14955928 aagggttaatgttaaacacattttgttccaacat 14955961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 11869553 - 11869585
Alignment:
Q  19 tcaagggttaatgttacacacattttgttccaa 51  Q
    |||||||||||||||| ||||||||||||||||    
T  11869553 tcaagggttaatgttaaacacattttgttccaa 11869585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 22141214 - 22141246
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  22141214 aagggttaatgttaaacacattttgttccaaca 22141246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 24775188 - 24775156
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  24775188 aagggttaatgttaaacacattttgttccaaca 24775156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 33583732 - 33583764
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  33583732 aagggttaatgttaaacacattttgttccaaca 33583764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 33591221 - 33591253
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  33591221 aagggttaatgttaaacacattttgttccaaca 33591253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 33598352 - 33598384
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  33598352 aagggttaatgttaaacacattttgttccaaca 33598384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 23390720 - 23390686
Alignment:
Q  21 aagggttaatgttacacacattttgttccaacata 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  23390720 aagggttaatgttaaacacattttgttccaacata 23390686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 33606151 - 33606185
Alignment:
Q  19 tcaagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||||| ||||||||||||||||||    
T  33606151 tcaagggttaatgttaaacacattttgttccaaca 33606185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 16111573 - 16111541
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  16111573 aagggttaatgttaaacacattttgttccaaca 16111541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 4887473 - 4887507
Alignment:
Q  21 aagggttaatgttacacacattttgttccaacata 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  4887473 aagggttaatgttaaacacattttgttccaacata 4887507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 5430328 - 5430360
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  5430328 aagggttaatgttaaacacattttgttccaaca 5430360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 31800517 - 31800483
Alignment:
Q  21 aagggttaatgttacacacattttgttccaacata 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  31800517 aagggttaatgttaaacacattttgttccaacata 31800483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 6392983 - 6393016
Alignment:
Q  21 aagggttaatgttacacacattttgttccaacat 54  Q
    |||||||||||||| |||||||||||||||||||    
T  6392983 aagggttaatgttaaacacattttgttccaacat 6393016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 28711348 - 28711316
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  28711348 aagggttaatgttaaacacattttgttccaaca 28711316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 17381901 - 17381934
Alignment:
Q  21 aagggttaatgttacacacattttgttccaacat 54  Q
    |||||||||||||| |||||||||||||||||||    
T  17381901 aagggttaatgttaaacacattttgttccaacat 17381934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 7618089 - 7618057
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  7618089 aagggttaatgttaaacacattttgttccaaca 7618057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 15955158 - 15955190
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  15955158 aagggttaatgttaaacacattttgttccaaca 15955190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 16877686 - 16877718
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  16877686 aagggttaatgttaaacacattttgttccaaca 16877718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 25448143 - 25448110
Alignment:
Q  21 aagggttaatgttacacacattttgttccaacat 54  Q
    |||||||||||||| |||||||||||||||||||    
T  25448143 aagggttaatgttaaacacattttgttccaacat 25448110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 15335730 - 15335698
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  15335730 aagggttaatgttaaacacattttgttccaaca 15335698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 15424795 - 15424763
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  15424795 aagggttaatgttaaacacattttgttccaaca 15424763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 15516099 - 15516067
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  15516099 aagggttaatgttaaacacattttgttccaaca 15516067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 24551760 - 24551792
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  24551760 aagggttaatgttaaacacattttgttccaaca 24551792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 24832742 - 24832710
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  24832742 aagggttaatgttaaacacattttgttccaaca 24832710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 10693316 - 10693352
Alignment:
Q  19 tcaagggttaatgttacacacattttgttccaacata 55  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  10693316 tcaagagttaatgttaaacacattttgttccaacata 10693352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 10907082 - 10907118
Alignment:
Q  19 tcaagggttaatgttacacacattttgttccaacata 55  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  10907082 tcaagagttaatgttaaacacattttgttccaacata 10907118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 29121838 - 29121870
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  29121838 aagggttaatgttaaacacattttgttccaaca 29121870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 55732258 - 55732290
Alignment:
Q  21 aagggttaatgttacacacattttgttccaaca 53  Q
    |||||||||||||| ||||||||||||||||||    
T  55732258 aagggttaatgttaaacacattttgttccaaca 55732290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University