View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9331_low_40 (Length: 288)
Name: NF9331_low_40
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 17283855 - 17284130
Alignment:
| Q |
1 |
catcctgcaaacctcaaattttctccacatgtaaaattaaggaatcaatttcggcacattcgtaaaatagaaggataccaaccttttaacactattaccc |
100 |
Q |
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| T |
17283855 |
catcccgcaaacctcaaattttctccacatgtaaaattaaggaatcaatttcggcacattcgtaaaatagaaggataccaaccttttaacactattaccc |
17283954 |
T |
|
| Q |
101 |
ggttgaaccacacaactaccaataccaacgtcaacattccactttcttgaagaagccatggaagaagcacgcgctgcctggatgacattctaacgtcgcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
17283955 |
ggttgaaccacacaactaccaataccaacgtcaacatcccactttcttggagcagccatggaagaagcacgggctgcctggatgacattctaaggtcgcg |
17284054 |
T |
|
| Q |
201 |
cagaaacaccatcatccttgtcgctgtaatcatgtcgaaccttctcccttgcaaccgaaaaccataccttcaacct |
276 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17284055 |
cagaaacaccatcatccttgtcgttttaatcatgtcgaaccttctcccttgcaaccgaaaaccataccttcaacct |
17284130 |
T |
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