View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9331_low_46 (Length: 272)
Name: NF9331_low_46
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 106 - 258
Target Start/End: Original strand, 51526523 - 51526675
Alignment:
| Q |
106 |
catactaatgttcttctcacacgcactgaatagatgaaatctgaatgacacgtaacactgtttcggttaatacaataaaaaactggttatctcttcctat |
205 |
Q |
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| T |
51526523 |
catactaatgttcttctcacacgcactgaatagatgaaatctgaatgacacgtaacactgtttcggttaatacaataaaaaactggtcatctcttcctgt |
51526622 |
T |
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| Q |
206 |
ccaaattccaatcgtgccaatagtgttttctttacggtcatctggtagtgaac |
258 |
Q |
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| T |
51526623 |
ccaaattccaatcgtgccaatagtgttttctttacagtcatgtggtggtgaac |
51526675 |
T |
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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 51526336 - 51526420
Alignment:
| Q |
14 |
cagagagcaggtataatcaatcgaccttctttttccc-tttttcaaa-tccgaggtttgaataccaatcctttcatattgtaatg |
96 |
Q |
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| T |
51526336 |
cagagagcaggtataatcaatcgaccttctttttcccatttttcaaattctgaggttcgaataccaatcctttcatattgtaatg |
51526420 |
T |
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