View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9331_low_5 (Length: 486)
Name: NF9331_low_5
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_5 |
 | |
|
| [»] scaffold0112 (6 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
|
| [»] scaffold0759 (1 HSPs) |
| | |
|
| [»] scaffold0233 (1 HSPs) |
| | |
|
| [»] scaffold0093 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0112 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 26224 - 25780
Alignment:
| Q |
19 |
agcttgctactttggctgtcttcatgctcaccatattctgtatgtataannnnnnnaacattgcgcacatctttctcacggatatatttatatgttatga |
118 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
26224 |
agcttgttacttcggctgtcttcatgctcaccacattctgtatgtatatttttcttaacattgcgctcatctttctcaccgatatatttatatgttatga |
26125 |
T |
|
| Q |
119 |
actcgtaaaatattcttatttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
26124 |
actcgtaaaatattcttatttaatgaaaaattggtttagtacatgcttaatttaataccaaacattcctaaatatgtacgttatatgcatag--atgtgt |
26027 |
T |
|
| Q |
219 |
attggatccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggcaatatttgagttgtgcaagctacggtatggg |
318 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| | |
|
|
| T |
26026 |
attggttccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagc------ata------ttgtgcaagatacggtatgcg |
25939 |
T |
|
| Q |
319 |
ttgttcaatatttgagaagattccatgcggcaactccataacgtgtcgttgtgtccatttgga---ttttggaatgacctgcattgatacgggcgctggc |
415 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||| | |||| |
|
|
| T |
25938 |
ttgttcaatatttgagttgaatccatgcggcaactccataacgtgtcaatgtgtcagtttgcaaatatttggaatgacctgcattggagtaccagatggc |
25839 |
T |
|
| Q |
416 |
ctctaactctaatgaaaaggagtacttgaagatggctttggatattgccacttaagaat |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25838 |
ctctaactctaatgaaaaggagtacttgaagatggctttggatattgctacttaagaat |
25780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 146 - 290
Target Start/End: Complemental strand, 41243 - 41101
Alignment:
| Q |
146 |
aaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaacttcctttgc |
245 |
Q |
| |
|
|||||| | |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| |
|
|
| T |
41243 |
aaattaatatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatag--atgtgtattggtttcaactttaacttcctttgc |
41146 |
T |
|
| Q |
246 |
catttgcagtaatcatccagacgaagaacgttgaagcaaggcaat |
290 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||| |||||| |
|
|
| T |
41145 |
catttgcagtaattgttcagattaagaacgttgaagcagggcaat |
41101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 412 - 474
Target Start/End: Complemental strand, 40897 - 40835
Alignment:
| Q |
412 |
tggcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccacttaagaat |
474 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40897 |
tggcctctaactctaatgaaaaagactacttgaagatggctttggaaattgccacttaagaat |
40835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 17337 - 17285
Alignment:
| Q |
231 |
tttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagca |
283 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17337 |
tttaacttcctttgccctttgcagtaatcattcagacgaagaacgttgaagca |
17285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 17515 - 17406
Alignment:
| Q |
21 |
cttgctactttggctgtcttcatgctcaccatattctgtatgtataannnnnnnaacattgcgcacatctttctcacggatatatt--tatatgttatga |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||| || |||| | |||||||||||| |||||||| ||||||||| || |
|
|
| T |
17515 |
cttgttactttggctgtcttcatgctcaccatattttgtatgtata----ttttaaaattgtgttcatctttctcaccgatatatttatatatgttagga |
17420 |
T |
|
| Q |
119 |
actcgtaaaatatt |
132 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
17419 |
actcgtaaaatatt |
17406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 451
Target Start/End: Complemental strand, 41060 - 40943
Alignment:
| Q |
340 |
tccatgcggcaactccataacgtgtcgttgtgtccatttggattt---tggaatgacctgcattga---tacgggcgctggcctctaactctaatgaaaa |
433 |
Q |
| |
|
|||||||||| || || |||||||||||||||| ||||| |||| ||||| |||||| |||| || ||| | |||||||||| |||||||||| |
|
|
| T |
41060 |
tccatgcggcgacatcacaacgtgtcgttgtgtctatttgcatttagttggaagtacctgcgttgactataggggtgatggcctctaattctaatgaaat |
40961 |
T |
|
| Q |
434 |
ggagtacttgaagatggc |
451 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
40960 |
ggagtacttgaagatggc |
40943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 474
Target Start/End: Original strand, 26791878 - 26792334
Alignment:
| Q |
19 |
agcttgctactttggctgtcttcatgctcaccatattctgtatgtataannnnnnnaacattgcgcacatctttctcacggatatatttatatgttatga |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| || ||||||||||| ||| ||||||||||||| || |
|
|
| T |
26791878 |
agcttgctaatttggctgtcttcatgctcaccacattctgtatgtatattttttttaacattgtgctcatctttctcatcgatgtatttatatgttagga |
26791977 |
T |
|
| Q |
119 |
actcgtaaaatattcttatttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgt |
218 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26791978 |
actcgtaaaatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagatatgtgt |
26792077 |
T |
|
| Q |
219 |
attggatccaactttaacttcctttgccatttgcagtaatcatc----cagacgaagaacgttgaagcaaggcaatatttgagttgtgcaagctacggta |
314 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| || |||| |
|
|
| T |
26792078 |
attggttccaactttaatttcctttgccatttgcagtaatcatccagacagacgaagaacgttgaagcaaggca---------ttgtgcaagatatggta |
26792168 |
T |
|
| Q |
315 |
tgggttgttcaatatttgagaagattccatgcggcaactccataacgtgtcgttgtgtccatttgga---ttttggaatgacctgcattg---atacggg |
408 |
Q |
| |
|
|| |||| || |||||||| || |||||||||||| ||||||||||||| |||||| |||| | ||||||||| ||||||||| ||||||| |
|
|
| T |
26792169 |
tgccttgtgcagtatttgagtcgaatccatgcggcaattccataacgtgtcagtgtgtcagtttgtacatatttggaatgtcctgcattgactatacggg |
26792268 |
T |
|
| Q |
409 |
cgctggcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccacttaagaat |
474 |
Q |
| |
|
| |||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26792269 |
tgatggcctctaactctaatgaaaaaaactacttgaagatggctttggaaattgccacttaagaat |
26792334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 26778029 - 26777766
Alignment:
| Q |
19 |
agcttgctactttggctgtcttcatgctcaccatattctgtatgtataannnnnnn-aacattgcgcacatctttctcacggatatatttatatgttatg |
117 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||||||| | |
|
|
| T |
26778029 |
agcttgttactttggctgtcttcatgctcaccacattctgtatgtatatttttttttaacattgcgctcatctttctcaccgatatatttatatgttagg |
26777930 |
T |
|
| Q |
118 |
aactcgtaaaatattcttatttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtg |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
26777929 |
aactcgtaaaatattcttaattaatgaaaaattagtatactacattctcaatttaataccaaactctcctaaatatatacgttatatgcatag--atgtg |
26777832 |
T |
|
| Q |
218 |
tattggatccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagca |
283 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
26777831 |
tattggtttcaactttaacttcctttgccatttgcagtaatcgtccagacgaagaacgtagaagca |
26777766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 144 - 281
Target Start/End: Original strand, 26834603 - 26834738
Alignment:
| Q |
144 |
aaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaacttccttt |
243 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
26834603 |
aaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatag--atgtgtattggttccaactttaactttcttt |
26834700 |
T |
|
| Q |
244 |
gccatttgcagtaatcatccagacgaagaacgttgaag |
281 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26834701 |
gccatttgcagtaatcgtccagacgaagaacgttgaag |
26834738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 140 - 282
Target Start/End: Original strand, 26729406 - 26729547
Alignment:
| Q |
140 |
aatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaacttc |
239 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||| ||||||||||||| | |||||||||| ||| ||| | |||| ||||| ||||| ||| |
|
|
| T |
26729406 |
aatgaaaaattaatatactacatgctcaatttaataccaaactttcctaaatatatgctttatatgcatggatgtgtat-ttggttccaattttaatttc |
26729504 |
T |
|
| Q |
240 |
ctttgccatttgcagtaatcatccagacgaagaacgttgaagc |
282 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26729505 |
ctttgtcatttgcagtaatcgtccagacgaagaacgttgaagc |
26729547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 26745446 - 26745560
Alignment:
| Q |
19 |
agcttgctactttggctgtcttcatgctcaccatattctgtatgtataannnnnnnaacattgcgcacatctttctcacggatatatt--tatatgttat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
26745446 |
agcttgctactttggctgtcttcatgctcactatattctgtatgtataattttttaaa-attgtattcatctttctcaccgatatatttatatatgttag |
26745544 |
T |
|
| Q |
117 |
gaactcgtaaaatatt |
132 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26745545 |
gaactcgtaaaatatt |
26745560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 26745629 - 26745688
Alignment:
| Q |
231 |
tttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggcaat |
290 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
26745629 |
tttaacttcctttgccctttgcagtaatcgtccagacgaagaacgttcaagcagggcaat |
26745688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 26729298 - 26729345
Alignment:
| Q |
19 |
agcttgctactttggctgtcttcatgctcaccatattctgtatgtata |
66 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26729298 |
agctcgctactttggctgtcttcatgctcaccacattctgtatgtata |
26729345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 26834559 - 26834603
Alignment:
| Q |
75 |
aacattgcgcacatctttctcacggatatatttatatgttatgaa |
119 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
26834559 |
aacattgcgctcatctttctcaccgatttatttatatgttatgaa |
26834603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 26745586 - 26745627
Alignment:
| Q |
140 |
aatgaaaaattagtttactacatgctcaatttaatcccaaac |
181 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
26745586 |
aatgaaaaattattatactacatgctcaatttaatgccaaac |
26745627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 7747 - 7294
Alignment:
| Q |
19 |
agcttgctactttggctgtcttcatgctcaccatattctgtatgtataannnnnnn-aacattgcgcacatctttctcacggatatatttatatgttatg |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||||||| | |
|
|
| T |
7747 |
agcttgctaatttggctgtcttcatgctcaccacattctgtatgtatatttttttttaacattgcgctcatctttctcaccgatatatttatatgttagg |
7648 |
T |
|
| Q |
118 |
aactcgtaaaatattcttatttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtg |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7647 |
aactcgtaaaatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatatgtg |
7548 |
T |
|
| Q |
218 |
tattggatccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggcaatatttgagttgtgcaagctacggtatgg |
317 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
7547 |
tattggttccaactttaacttcctttaccatttgcagtaattgtccagattaagaacgttgaagcagggcaa---------tgtgcaagagtcggtatgc |
7457 |
T |
|
| Q |
318 |
gttgttcaatatttgagaagattccatgcggcaactccataacgtgtcgttgtgtccatttggatt---ttggaatgacctgcattg---atacgggcgc |
411 |
Q |
| |
|
|||||||| | || |||||||||| || | ||||||||||||||||||||||| ||| |||||| |||||||||| ||||||| | |
|
|
| T |
7456 |
gttgttcacgggcattgccgaatccatgcggcgacatcgtaacgtgtcgttgtgtccatttgcatttagttggaagtacctgcattgactatacgggtga |
7357 |
T |
|
| Q |
412 |
tggcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccacttaagaat |
474 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7356 |
tggcctctaactctaatgaaaaagactacttgaagatggctttggaaattgccacttaagaat |
7294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0759 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0759
Description:
Target: scaffold0759; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 26 - 474
Target Start/End: Original strand, 2074 - 2501
Alignment:
| Q |
26 |
tactttggctgtcttcatgctcaccatattctgtatgtataannnnnnnaacattgcgcacatctttctcacggatatatttatatgttatgaactcgta |
125 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||| ||| | |||| ||||||| |||||||||||||||| ||||||||| |
|
|
| T |
2074 |
tactttggctgtcttcatgctcaccacattctgtatgtatatattttttaactttgtgttcatcattctcaccaatatatttatatgttaggaactcgta |
2173 |
T |
|
| Q |
126 |
aaatattcttatttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggat |
225 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
2174 |
aaatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatag--atgtgtatcggtt |
2271 |
T |
|
| Q |
226 |
ccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggcaatatttgagttgtgcaagctacggtatgggttgttca |
325 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| || |||| || ||||||| |
|
|
| T |
2272 |
ccaactttaacttcctttgccatttgtagtaatcatccagacgaagaacgttgaagcaaggca---------ttgtgcaagatatggtagggattgttca |
2362 |
T |
|
| Q |
326 |
atatttgagaagattccatgcggcaactccataacgtgtcgttgtgtccatttggat-tttggaatgacctgcattg---atacgggcgctggcctctaa |
421 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| || | | || |||||||||| |||||||| ||||||| | |||||||||| |
|
|
| T |
2363 |
atatttgagtcgaatccatgcggcaactccataac-----------tctaat---atatttggaatgatctgcattgactatacgggtgatggcctctaa |
2448 |
T |
|
| Q |
422 |
ctctaatgaaaaggagtacttgaagatggctttggatattgccacttaagaat |
474 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2449 |
ctctaatgaaaaaaactacttgaagatggctttggaaattgccacttaagaat |
2501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 17474 - 17691
Alignment:
| Q |
25 |
ctactttggctgtcttcatgctcaccatattctgtatgtataannnnnnn-aacattgcgcacatctttctcacggatatatttatatgttatgaactcg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
17474 |
ctactttggctgtcttcatgctcaccatattctgtatgtatatttttttttaacattgcgctcatctttctcatcgatgtatttatatgttagaaactcg |
17573 |
T |
|
| Q |
124 |
taaaatattcttatttaatgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattgg |
223 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17574 |
taaa-tattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatag--atgtgtattga |
17670 |
T |
|
| Q |
224 |
atccaactttaacttcctttg |
244 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
17671 |
ttccaactttaacttcctttg |
17691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 141 - 287
Target Start/End: Original strand, 20949 - 21093
Alignment:
| Q |
141 |
atgaaaaattagtttactacatgctcaatttaatcccaaacattcctaaatatatacgttatatgcatagatatgtgtattggatccaactttaacttcc |
240 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |
|
|
| T |
20949 |
atgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagata--tgtattggttccaactttaactttc |
21046 |
T |
|
| Q |
241 |
tttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggc |
287 |
Q |
| |
|
||||| ||||||||||||| || |||||| |||| |||||||||||| |
|
|
| T |
21047 |
tttgcaatttgcagtaatcgtcgagacgatgaacattgaagcaaggc |
21093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 20852 - 20953
Alignment:
| Q |
19 |
agcttgctactttggctgtcttcatgctcaccatattctgtatgtata-annnnnnnaacattgcgcacatctttctcacggatatatttatatgttatg |
117 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||| || ||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
20852 |
agcttgttactttggctgtcttcatgctcaccacattctgtatgtatatttttttttaatattgcgctcatctttctcaccgatatatttatatgttatg |
20951 |
T |
|
| Q |
118 |
aa |
119 |
Q |
| |
|
|| |
|
|
| T |
20952 |
aa |
20953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 474
Target Start/End: Original strand, 21213 - 21259
Alignment:
| Q |
428 |
tgaaaaggagtacttgaagatggctttggatattgccacttaagaat |
474 |
Q |
| |
|
|||||| || ||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
21213 |
tgaaaaagactacttgaggatggctttggaaattgccacttaagaat |
21259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 191 - 288
Target Start/End: Complemental strand, 13042176 - 13042081
Alignment:
| Q |
191 |
tatatacgttatatgcatagatatgtgtattggatccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggca |
288 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
13042176 |
tatataggttatatgcatagat--gtgtattggttccaactttaacttcctttgccatttgcagtaatcgtccagatgaagaacgttgaagcaaggca |
13042081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 191 - 288
Target Start/End: Complemental strand, 13050253 - 13050158
Alignment:
| Q |
191 |
tatatacgttatatgcatagatatgtgtattggatccaactttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagcaaggca |
288 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
13050253 |
tatataggttatatgcatagat--gtgtattggttccaactttaacttcctttgccatttgcagtaatcgtccagatgaagaacgttgaagcaaggca |
13050158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 13042325 - 13042213
Alignment:
| Q |
19 |
agcttgctactttggctgtcttcatgctcaccatattctgtatgtata-annnnnnnaacattgcgcacatctttctcacggatatatttatatgttatg |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | |||||||||||||| |||||||||| |||||||||||| |||||||||||||| || | |
|
|
| T |
13042325 |
agcttgctactttggctgttttcatgctcacgacattctgtatgtatattgttttttaacattgcgctcatctttctcaccgatatatttatatg-tagg |
13042227 |
T |
|
| Q |
118 |
aactcgtaaaatat |
131 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
13042226 |
aactcataaaatat |
13042213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 13050402 - 13050290
Alignment:
| Q |
19 |
agcttgctactttggctgtcttcatgctcaccatattctgtatgtata-annnnnnnaacattgcgcacatctttctcacggatatatttatatgttatg |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | |||||||||||||| |||||||||| |||||||||||| |||||||||||||| || | |
|
|
| T |
13050402 |
agcttgctactttggctgttttcatgctcacgacattctgtatgtatattgttttttaacattgcgctcatctttctcaccgatatatttatatg-tagg |
13050304 |
T |
|
| Q |
118 |
aactcgtaaaatat |
131 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
13050303 |
aactcataaaatat |
13050290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 474
Target Start/End: Original strand, 12110383 - 12110443
Alignment:
| Q |
414 |
gcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccacttaagaat |
474 |
Q |
| |
|
|||||||| ||||| ||| | || ||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
12110383 |
gcctctaaatctaaagaacaagactaccttaagatggctttggaaattgccacttaagaat |
12110443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 474
Target Start/End: Original strand, 12124071 - 12124131
Alignment:
| Q |
414 |
gcctctaactctaatgaaaaggagtacttgaagatggctttggatattgccacttaagaat |
474 |
Q |
| |
|
||||||||||| || ||||| | ||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
12124071 |
gcctctaactccaaagaaaaaggctaccttaagatggctttggaaattgccacttaagaat |
12124131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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