View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9331_low_54 (Length: 261)
Name: NF9331_low_54
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 4167201 - 4167352
Alignment:
| Q |
2 |
tatcgtttctattttgtttcattttctatatttcaacatttctttgtcatgtgtttgattcttccatgtttaatttggagaccatggtatcatgtagatt |
101 |
Q |
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| T |
4167201 |
tatcgtttctattttgtttcattttctatatttcaacatttcttcgtcacgtgtttgatttttccatgtttaatttggagaccatggtatcatgtagatt |
4167300 |
T |
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| Q |
102 |
acatcgtctgctatatccaactatttcgtaactgatgtatgtcacttacaat |
153 |
Q |
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| T |
4167301 |
acatcgtctgctatatccaactaattcgtaactgatgtatgtcacttacaat |
4167352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 4151432 - 4151586
Alignment:
| Q |
2 |
tatcgtttctattttgtttcattttctatatttcaacatttctttgtcatgtgtttgattcttccatgtttaatttggagaccatggtatcatgtagatt |
101 |
Q |
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| T |
4151432 |
tatcgtttctattttgtttcattttctatatttcaacatttcttcgtcacgtgtttgatttttccatgtttaatttggagaccatggtatcatgtagatt |
4151531 |
T |
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| Q |
102 |
acatcgtctgctatatccaactatttcgt---aactgatgtatgtcacttacaat |
153 |
Q |
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| T |
4151532 |
acatcgtctgctatatccaactatttcgtataaactgatgtctgtcacttacaat |
4151586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 4167474 - 4167547
Alignment:
| Q |
151 |
aatgctcgatgaatttcattttatatcaagtcctgcatgtaacgcagattattattagcacactataatattac |
224 |
Q |
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| T |
4167474 |
aatgctcgatgaatttcattttatatcaagtcctgcatgtaacgcagattattattagcacactataatattac |
4167547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 7021282 - 7021325
Alignment:
| Q |
84 |
catggtatcatgtagattacatcgtctgctatatccaactattt |
127 |
Q |
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| T |
7021282 |
catggtatcatatagattacatcgtctgctgtatccaactattt |
7021325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 4152183 - 4152241
Alignment:
| Q |
151 |
aatgctcgatgaatttcatttta-----tatcaagtcctgcatgtaacgcagattatta |
204 |
Q |
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| T |
4152183 |
aatgcttgatgaatttcattttagctactatcaagtcctgcatgtaacgcagattatta |
4152241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 7021214 - 7021244
Alignment:
| Q |
1 |
ttatcgtttctattttgtttcattttctata |
31 |
Q |
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| T |
7021214 |
ttatcgtttctattttgtttcattttctata |
7021244 |
T |
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