View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9331_low_55 (Length: 250)

Name: NF9331_low_55
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9331_low_55
NF9331_low_55
[»] chr5 (8 HSPs)
chr5 (21-237)||(9619108-9619324)
chr5 (115-241)||(19969331-19969457)
chr5 (86-234)||(1347676-1347824)
chr5 (92-237)||(20112128-20112273)
chr5 (106-226)||(13711898-13712018)
chr5 (112-235)||(19807082-19807205)
chr5 (92-233)||(26536172-26536313)
chr5 (13-44)||(17377689-17377720)
[»] chr6 (1 HSPs)
chr6 (161-233)||(16258249-16258321)
[»] scaffold0009 (3 HSPs)
scaffold0009 (171-229)||(34169-34227)
scaffold0009 (171-229)||(21922-21980)
scaffold0009 (171-229)||(40799-40857)
[»] chr3 (2 HSPs)
chr3 (161-211)||(32226768-32226818)
chr3 (168-233)||(32241837-32241902)
[»] chr1 (1 HSPs)
chr1 (182-237)||(26052813-26052868)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 9619324 - 9619108
Alignment:
Q  21 agagatccttggacaggaggataattcttcataaagttcacgtttgggtctataagatatagggtaaattttcatatcctgtagtagtctcgcattctga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  9619324 agagatccttggacaggaggataattcttcataaagttcacgtttgggtctataagatatagggtgaattttcatatcctgtagaagtctcgcattctga 9619225  T
Q  121 aaaatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9619224 aaaatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatgttacatgttgttaaatgagatgaaacacattcaggaacatgatgtg 9619125  T
Q  221 ggtatttccaatcctct 237  Q
    |||||||||||||||||    
T  9619124 ggtatttccaatcctct 9619108  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 115 - 241
Target Start/End: Original strand, 19969331 - 19969457
Alignment:
Q  115 ttctgaaaaatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacat 214  Q
    ||||| ||||||||| |||||||||||||||||| ||||||| || ||||||||  ||||||||||||||| | ||||||  |||||||||| |||||||    
T  19969331 ttctgcaaaatatacgttgcaaatcgaaaatcagcttccacagcttgatagtgtgtaatattacatgttgtaagatgagacaaaacacattcgggaacat 19969430  T
Q  215 gatgtgggtatttccaatcctctctgc 241  Q
    ||| ||||||||||||||| |||||||    
T  19969431 gatatgggtatttccaatcgtctctgc 19969457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 86 - 234
Target Start/End: Original strand, 1347676 - 1347824
Alignment:
Q  86 aaattttcatatcctgtagtagtctcgcattctgaaaaatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgt 185  Q
    |||| |||||| ||||||  ||| | |||||||  || |||||  |||||||||| ||||||| ||||||| || |||||||||  ||||||||||||||    
T  1347676 aaatattcataacctgtaacagttttgcattcttcaatatataggttgcaaatcggaaatcagcttccacagcttgatagtgtatgatattacatgttgt 1347775  T
Q  186 taaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcc 234  Q
     | |||||| |||||||||| ||||||||||| ||||||| ||||||||    
T  1347776 aagatgagaggaaacacattgaggaacatgatatgggtatatccaatcc 1347824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 237
Target Start/End: Complemental strand, 20112273 - 20112128
Alignment:
Q  92 tcatatcctgtagtagtctcgcattctgaaaaatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatg 191  Q
    ||||| ||||||| ||||| |||||||| ||||||||  |||||||| |||||||| |||| | | ||  ||||  || ||| ||||||||||| | | |    
T  20112273 tcataacctgtagaagtcttgcattctgcaaaatatatgttgcaaattgaaaatcatgttcgaaagcttcatagcctacaatgttacatgttgtgagacg 20112174  T
Q  192 agatgaaacacattcaggaacatgatgtgggtatttccaatcctct 237  Q
    |||  |||||||||||||||||| || |||||||||||||| ||||    
T  20112173 agacaaaacacattcaggaacatcatatgggtatttccaattctct 20112128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 13711898 - 13712018
Alignment:
Q  106 agtctcgcattctgaaaaatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacatt 205  Q
    |||||| ||||||| ||||||||   ||||||||| ||||||| ||||||| ||  ||||| || |||   ||| |||||||||||||| ||||||| ||    
T  13711898 agtctctcattctgcaaaatatatgctgcaaatcggaaatcagcttccacaacttcatagtttataattcgacaagttgttaaatgagaggaaacacctt 13711997  T
Q  206 caggaacatgatgtgggtatt 226  Q
     |||||||||||  |||||||    
T  13711998 taggaacatgatcagggtatt 13712018  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 19807205 - 19807082
Alignment:
Q  112 gcattctgaaaaatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaa 211  Q
    ||||| || ||||||||  |||||||| |||| |||| ||||| | || |||||| |   || | ||||||||||| || ||| | ||||||||||||||    
T  19807205 gcattttgcaaaatatatgttgcaaattgaaagtcagcttccatagcttgatagtcttcgatttcacatgttgttagattagaggtaacacattcaggaa 19807106  T
Q  212 catgatgtgggtatttccaatcct 235  Q
    |||||| ||||| |||||||||||    
T  19807105 catgatatgggtgtttccaatcct 19807082  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 26536313 - 26536172
Alignment:
Q  92 tcatatcctgtagtagtctcgcattctgaaaaatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatattacatgttgttaaatg 191  Q
    ||||||||||||  ||||| |||||||  || |||||  |||||||||||||||| | |||  || ||  ||||| || |||  |||||||||| | |||    
T  26536313 tcatatcctgtacaagtctagcattcttcaagatatatattgcaaatcgaaaatccgcttctgcagcttcatagtttataatgctacatgttgtaagatg 26536214  T
Q  192 agatgaaacacattcaggaacatgatgtgggtatttccaatc 233  Q
    |||   |||||  ||||||||||||| |||||||||||||||    
T  26536213 agacctaacactctcaggaacatgatctgggtatttccaatc 26536172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 44
Target Start/End: Complemental strand, 17377720 - 17377689
Alignment:
Q  13 catgtgggagagatccttggacaggaggataa 44  Q
    ||||||||||||||||||||||||||||||||    
T  17377720 catgtgggagagatccttggacaggaggataa 17377689  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 16258249 - 16258321
Alignment:
Q  161 gatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatc 233  Q
    |||||| |||||| || |||||||||||||| ||||||||||| ||||||||   || |||||||||||||||    
T  16258249 gatagtctaaaattttgcatgttgttaaatgggatgaaacacactcaggaaccgtatatgggtatttccaatc 16258321  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 34227 - 34169
Alignment:
Q  171 aatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcc 229  Q
    ||||||||| ||||| | ||||||||||||||||||||||| ||||| | |||||||||    
T  34227 aatattacacgttgtaagatgagatgaaacacattcaggaatatgatttcggtatttcc 34169  T

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Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 21980 - 21922
Alignment:
Q  171 aatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcc 229  Q
    |||||| |||||||| | |||||| |||||||||||||||| ||||| | |||||||||    
T  21980 aatattgcatgttgtaagatgagacgaaacacattcaggaatatgatcttggtatttcc 21922  T

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Target: scaffold0009; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 40857 - 40799
Alignment:
Q  171 aatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttcc 229  Q
    |||||||  |||||| | |||||| |||||||||||||||||||||| | |||||||||    
T  40857 aatattaattgttgtaagatgagacgaaacacattcaggaacatgatcttggtatttcc 40799  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 32226818 - 32226768
Alignment:
Q  161 gatagtgtaaaatattacatgttgttaaatgagatgaaacacattcaggaa 211  Q
    |||||| |||||| || |||||||||||||| |||||||||||||||||||    
T  32226818 gatagtctaaaattttgcatgttgttaaatgggatgaaacacattcaggaa 32226768  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 32241837 - 32241902
Alignment:
Q  168 taaaatattacatgttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatc 233  Q
    |||||| || |||||||||||||| ||||||||||| ||||||||   || ||||| |||||||||    
T  32241837 taaaattttgcatgttgttaaatgggatgaaacacaatcaggaaccgtatatgggtgtttccaatc 32241902  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 26052813 - 26052868
Alignment:
Q  182 ttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcctct 237  Q
    |||||| |||||||||||||||||| |||||||||| ||| |||| ||||| ||||    
T  26052813 ttgttagatgagatgaaacacattctggaacatgatctggatattcccaatgctct 26052868  T

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