View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9331_low_57 (Length: 249)
Name: NF9331_low_57
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 4150858 - 4150693
Alignment:
| Q |
16 |
cagagagagttgtaatgtatctacagacatttcataacaagagagactaagggaaataaaacaaaaaggccaaatcagaatgnnnnnnngttcttaaaag |
115 |
Q |
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| T |
4150858 |
cagagagagttgtaatgtatctacagacatttcataacaagagagaccaagggaaataaaacaaaaaggccaaatcagaatgaaaaaaagttctgaaaag |
4150759 |
T |
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| Q |
116 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgccaagggtgactttttcagcaa |
181 |
Q |
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| T |
4150758 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgctaagggtgacttttgcagcaa |
4150693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 4166627 - 4166462
Alignment:
| Q |
16 |
cagagagagttgtaatgtatctacagacatttcataacaagagagactaagggaaataaaacaaaaaggccaaatcagaatgnnnnnnngttcttaaaag |
115 |
Q |
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| T |
4166627 |
cagagagagttgtaatgtatctacagacatttcataacaagagagaccaagggaaataaaacaaaaaggccaaatcagaatgaaaaaaagttctgaaaag |
4166528 |
T |
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| Q |
116 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgccaagggtgactttttcagcaa |
181 |
Q |
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| T |
4166527 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgctaagggtgacttttgcagcaa |
4166462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 4150645 - 4150591
Alignment:
| Q |
172 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccagg |
226 |
Q |
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| T |
4150645 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccagg |
4150591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 4166414 - 4166360
Alignment:
| Q |
172 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccagg |
226 |
Q |
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| T |
4166414 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccagg |
4166360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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