View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9331_low_62 (Length: 243)
Name: NF9331_low_62
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 48584625 - 48584399
Alignment:
| Q |
1 |
gcaaaatgcaaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaaa |
100 |
Q |
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| T |
48584625 |
gcaaaatgcaaacaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaaa |
48584526 |
T |
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| Q |
101 |
catgcatcattaattaataatgttaacatctagaacatgtaatatcatccatttcactgtcctttcctcactacatggataaggataattttattcatgc |
200 |
Q |
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| T |
48584525 |
catgcatcattaattaataatgttaacatctagaacatgtaatatcatccatttcactgtcctttcctcactacatggataaggataattttattcatgc |
48584426 |
T |
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| Q |
201 |
agtttatatttttgtgtttgcagttat |
227 |
Q |
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| T |
48584425 |
agtttatatttttgtgtttgcagttat |
48584399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 11546512 - 11546415
Alignment:
| Q |
3 |
aaaatgcaaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaaa |
100 |
Q |
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| T |
11546512 |
aaaatgcaataaagtggaagaaaaaggctgaggaagcagtggccattggtggatcctctgatcggaatcttgatgaatttttggaagacattaagaaa |
11546415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 48619054 - 48619150
Alignment:
| Q |
3 |
aaaatgcaaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaa |
99 |
Q |
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| T |
48619054 |
aaaatgcaatgaagtggaagaagaaggcggatgaagcagtggccattggtggatcctctgatcggaatcttgatgaatttatggaagacattcagaa |
48619150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 48628206 - 48628108
Alignment:
| Q |
3 |
aaaatgcaaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaaac |
101 |
Q |
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||||||||| |||||||||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |
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| T |
48628206 |
aaaatgcaatgaagtggaagaaggaggcagaggaagcagtggccgttggtggatcctctgattggaatcttgatgcatttatggaagacattaaaaaac |
48628108 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 48666449 - 48666350
Alignment:
| Q |
3 |
aaaatgcaaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaaaca |
102 |
Q |
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| T |
48666449 |
aaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtggttcctcggaccgacatcttgatgcatttatggaagacattaagaaaca |
48666350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 19666408 - 19666506
Alignment:
| Q |
1 |
gcaaaatgcaaaaaagtggaagaagaaggcggaggaagctttggccgttggtggatcctctgatcggaatcttgatgagtttatggaagacattaagaa |
99 |
Q |
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||||||||||| ||||||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19666408 |
gcaaaatgcaatcaagtggaagaaagcggcggaggaagcggtggcgaccggtggttcctctgatcggaatcttgatgaatttatggaagacattaagaa |
19666506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 27227389 - 27227341
Alignment:
| Q |
50 |
ggtggatcctctgatcggaatcttgatgagtttatggaagacattaaga |
98 |
Q |
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||||| |||||||||||| || |||||| ||||||||||||||||||| |
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| T |
27227389 |
ggtggttcctctgatcggcatattgatgcatttatggaagacattaaga |
27227341 |
T |
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