View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9331_low_67 (Length: 229)
Name: NF9331_low_67
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 58 - 211
Target Start/End: Original strand, 2691983 - 2692136
Alignment:
| Q |
58 |
gaaccatacatgaaaaaatagtgctagtgataaatgataattaaaattgaagttccatatacatggaaacaaagcttaaggaaccctttgaagcacctta |
157 |
Q |
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| T |
2691983 |
gaaccatacatgaaaaaatagtgctagtgataaatgataattaaaattgaagttccatatacatggaaacaaagcttaaggaaccctttgaagcacctta |
2692082 |
T |
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| Q |
158 |
cctaaatcagaatgatcaagacgaatatgcaatgtatttccatcgccacgttca |
211 |
Q |
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| T |
2692083 |
cctaaatcagaatgagcaagacgaatatgcaatgtatttccatcaccacgttca |
2692136 |
T |
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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2691911 - 2691944
Alignment:
| Q |
1 |
aaaaatctgagactcatcatcttcagaaacaatg |
34 |
Q |
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| T |
2691911 |
aaaaatctgagactcatcatcttcagaaacaatg |
2691944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 14521101 - 14521184
Alignment:
| Q |
102 |
aattgaagttccatatacatggaaacaaagcttaaggaaccctttgaagcaccttacctaaatcagaatgatcaagacgaatat |
185 |
Q |
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| T |
14521101 |
aattgaagatcaatatacatggaaacaaagctaaaggaaccctttgatgtatcttacctaaatcagactgagcaagacgaatat |
14521184 |
T |
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