View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9331_low_7 (Length: 473)

Name: NF9331_low_7
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9331_low_7
NF9331_low_7
[»] chr6 (5 HSPs)
chr6 (16-458)||(16863593-16864021)
chr6 (369-461)||(12182168-12182260)
chr6 (332-372)||(6977867-6977907)
chr6 (336-371)||(16863511-16863546)
chr6 (332-365)||(6977316-6977349)
[»] chr7 (2 HSPs)
chr7 (16-330)||(40471265-40471579)
chr7 (93-157)||(26332543-26332607)
[»] chr3 (4 HSPs)
chr3 (369-461)||(48057828-48057920)
chr3 (81-187)||(2056300-2056406)
chr3 (332-371)||(48053440-48053479)
chr3 (79-173)||(26967036-26967130)
[»] chr2 (4 HSPs)
chr2 (369-461)||(28851104-28851196)
chr2 (369-457)||(1389772-1389860)
chr2 (332-371)||(28847608-28847647)
chr2 (335-371)||(1394607-1394643)
[»] chr5 (4 HSPs)
chr5 (369-457)||(8066913-8067001)
chr5 (79-172)||(18876301-18876394)
chr5 (79-197)||(31615312-31615430)
chr5 (335-371)||(8062125-8062161)
[»] chr4 (5 HSPs)
chr4 (369-442)||(9180080-9180153)
chr4 (332-371)||(55986007-55986046)
chr4 (81-157)||(3669194-3669270)
chr4 (332-371)||(55985056-55985095)
chr4 (90-151)||(32110260-32110321)
[»] chr8 (1 HSPs)
chr8 (332-371)||(38613154-38613193)


Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 16863593 - 16864021
Alignment:
Q  16 cacagaacattgaggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagca 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||      
T  16863593 cacagagcattgaggaggaccaaaaagcattaccatccacaaataatgttgatagaccttcgtatgatggatataactagagaaaatatggaaagaag-- 16863690  T
Q  116 agtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgca 215  Q
                |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16863691 ------------cgagtatcttcgaagttattacaagtgcacatatcctaattatccagttaaaaagaaagttgaaagatcattagatggtgagattgca 16863778  T
Q  216 gaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggttcaag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16863779 gaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgacttctgatggaatggttcaag 16863878  T
Q  316 ataaagtatggagtatcccccaattcttcaacccttcttcttcatctgttcttcttactttgaagcatccatgtcggaaatctgtccagagaacacgttt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16863879 ataaagtatggagtatcccccaattcttcaacccttcttcttcatctgttcttcttactttgaagcatccatgtcgggaatctgtccagagaacacgttt 16863978  T
Q  416 ccttgagttgatgtaacttccatattcgaatctttcttcttct 458  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  16863979 ccttgagttgatgtaacttccatattggaatctttcttcttct 16864021  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 369 - 461
Target Start/End: Complemental strand, 12182260 - 12182168
Alignment:
Q  369 cttactttgaagcatccatgtcggaaatctgtccagagaacacgtttccttgagttgatgtaacttccatattcgaatctttcttcttctctg 461  Q
    |||||| ||||||||||||||||| ||||| ||||  ||||| ||||||||||||||||  ||||||||||||| ||||| || |||||||||    
T  12182260 cttactatgaagcatccatgtcgggaatctttccattgaacatgtttccttgagttgattgaacttccatattcaaatctctcgtcttctctg 12182168  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 6977907 - 6977867
Alignment:
Q  332 cccccaattcttcaacccttcttcttcatctgttcttctta 372  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  6977907 ccccaaattcttcaacccttcttcttcatctgttcttctta 6977867  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 371
Target Start/End: Original strand, 16863511 - 16863546
Alignment:
Q  336 caattcttcaacccttcttcttcatctgttcttctt 371  Q
    ||||||||||||||||||||||||||||||||||||    
T  16863511 caattcttcaacccttcttcttcatctgttcttctt 16863546  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 365
Target Start/End: Original strand, 6977316 - 6977349
Alignment:
Q  332 cccccaattcttcaacccttcttcttcatctgtt 365  Q
    |||| |||||||||||||||||||||||||||||    
T  6977316 ccccaaattcttcaacccttcttcttcatctgtt 6977349  T

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Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 40471579 - 40471265
Alignment:
Q  16 cacagaacattgaggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40471579 cacagaacattgaggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagca 40471480  T
Q  116 agtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40471479 agtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgca 40471380  T
Q  216 gaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggttcaag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40471379 gaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggttcaag 40471280  T
Q  316 ataaagtatggagta 330  Q
    |||||||||||||||    
T  40471279 ataaagtatggagta 40471265  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 26332607 - 26332543
Alignment:
Q  93 tggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcac 157  Q
    |||||||||||||||||||| ||||| |||||||||||  |||| || |||||||||||||||||    
T  26332607 tggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccgcgtagttattacaagtgcac 26332543  T

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Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 369 - 461
Target Start/End: Original strand, 48057828 - 48057920
Alignment:
Q  369 cttactttgaagcatccatgtcggaaatctgtccagagaacacgtttccttgagttgatgtaacttccatattcgaatctttcttcttctctg 461  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||| |||||||||    
T  48057828 cttactttgaagcatccatgtcgggaatctgtccagagaacacgttttcttgagttgatagaacttccatattcgaatctttcgtcttctctg 48057920  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 2056300 - 2056406
Alignment:
Q  81 gatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaa 180  Q
    ||||||||||| |||||||||||||| || |||||||| || || |||||||| ||||||||||| |||||||| ||  || | ||||||||||||||||    
T  2056300 gatggatataattggagaaaatatggccaaaagcaagttaagggtagcgagtaccctcgaagttactacaagtgtactcattcaaattgtccagttaaaa 2056399  T
Q  181 agaaagt 187  Q
    |||||||    
T  2056400 agaaagt 2056406  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 48053440 - 48053479
Alignment:
Q  332 cccccaattcttcaacccttcttcttcatctgttcttctt 371  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48053440 cccccaattcttcaacccttcttcttcatctgttcttctt 48053479  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 26967130 - 26967036
Alignment:
Q  79 atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtcca 173  Q
    |||||||||| || ||||||||||||||||| || ||||| |||||||| ||  ||||  |||||||||| || ||||| || ||||||||||||    
T  26967130 atgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtcca 26967036  T

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Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 369 - 461
Target Start/End: Original strand, 28851104 - 28851196
Alignment:
Q  369 cttactttgaagcatccatgtcggaaatctgtccagagaacacgtttccttgagttgatgtaacttccatattcgaatctttcttcttctctg 461  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||    
T  28851104 cttactttgaagcatccatgtcaggaatctgtccagagaacacgtttctttgagttgatggaacttccatattcgaatctttcgtcttctctg 28851196  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 369 - 457
Target Start/End: Complemental strand, 1389860 - 1389772
Alignment:
Q  369 cttactttgaagcatccatgtcggaaatctgtccagagaacacgtttccttgagttgatgtaacttccatattcgaatctttcttcttc 457  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||    
T  1389860 cttactttgaagcatccatgtcgggaatctgtccagagaacacgtttccatgagatgatggaacttccatattcaaatctttcttcttc 1389772  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 28847608 - 28847647
Alignment:
Q  332 cccccaattcttcaacccttcttcttcatctgttcttctt 371  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  28847608 cccccaattcttcaacccttcttcttcatcttttcttctt 28847647  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 1394643 - 1394607
Alignment:
Q  335 ccaattcttcaacccttcttcttcatctgttcttctt 371  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  1394643 ccaactcttcaacccttcttcttcatctcttcttctt 1394607  T

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Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 369 - 457
Target Start/End: Original strand, 8066913 - 8067001
Alignment:
Q  369 cttactttgaagcatccatgtcggaaatctgtccagagaacacgtttccttgagttgatgtaacttccatattcgaatctttcttcttc 457  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||    
T  8066913 cttactttgaagcatccatgtcgggaatctgtccagagaacacgtttccatgagataatggaacttccatattcgaatctttcttcttc 8067001  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 18876394 - 18876301
Alignment:
Q  79 atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtcc 172  Q
    ||||||| || |||||||| ||||| |||||||| || || ||||| ||||||| ||||||||||||||||||||||||  ||||||| |||||    
T  18876394 atgatggctacaactggaggaaatacggacagaaacaggtgaaaggtagcgagtttcctcgaagttattacaagtgcacgcatcctaactgtcc 18876301  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 31615430 - 31615312
Alignment:
Q  79 atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaa 178  Q
    |||||||||| || ||| ||||||||||||| |||||||| || ||||| ||  ||||  ||||||| ||||| |||||||| ||||| |||||    ||    
T  31615430 atgatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatgcacataccctaactgtcctacaaa 31615331  T
Q  179 aaagaaagttgaaagatca 197  Q
     ||||||||||| ||||||    
T  31615330 gaagaaagttgagagatca 31615312  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 8062125 - 8062161
Alignment:
Q  335 ccaattcttcaacccttcttcttcatctgttcttctt 371  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  8062125 ccaactcttcaacccttcttcttcatctcttcttctt 8062161  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 369 - 442
Target Start/End: Original strand, 9180080 - 9180153
Alignment:
Q  369 cttactttgaagcatccatgtcggaaatctgtccagagaacacgtttccttgagttgatgtaacttccatattc 442  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9180080 cttactttgaagcatccatgtcgggaatctgtccagagaacacgtttccttgagttgatggaacttccatattc 9180153  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 371
Target Start/End: Complemental strand, 55986046 - 55986007
Alignment:
Q  332 cccccaattcttcaacccttcttcttcatctgttcttctt 371  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  55986046 cccccaattcttcaacccttcttcttcatctgttcttctt 55986007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 3669194 - 3669270
Alignment:
Q  81 gatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcac 157  Q
    |||||||| || ||||||||||||||| |||| ||||| |||||||| ||  ||||  |||||||||||||||||||    
T  3669194 gatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcac 3669270  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 55985056 - 55985095
Alignment:
Q  332 cccccaattcttcaacccttcttcttcatctgttcttctt 371  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  55985056 cccccaattcttcaacccttcttcttcatatgttcttctt 55985095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 32110321 - 32110260
Alignment:
Q  90 aactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaa 151  Q
    |||||||| || |||||||| || ||||| |||||  |||||| ||||||||||||||||||    
T  32110321 aactggaggaagtatggacaaaaacaagtgaaaggttgcgagtttcctcgaagttattacaa 32110260  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 371
Target Start/End: Complemental strand, 38613193 - 38613154
Alignment:
Q  332 cccccaattcttcaacccttcttcttcatctgttcttctt 371  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  38613193 cccccaattcttcaatccttcttcttcatctgttcttctt 38613154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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