View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9331_low_74 (Length: 209)
Name: NF9331_low_74
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_74 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 34431278 - 34431454
Alignment:
| Q |
15 |
cagagagaattgcaatgcctccagagaagaagtagaaagtggacattcctgccatgccacgttttgaatggccaataggttcagtagcgaggacgaaggc |
114 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34431278 |
cagagagaattgcaatgcctccggagaagaagtagaaagtggacattcctgccatgccacgttttgaatggccaataggttcagtagcgaggacgaaggc |
34431377 |
T |
|
| Q |
115 |
gcaaaggccaacaccaccattgctaaaaccggtgaggaggcggaggaagacataggtccaatagttaggggagaatg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34431378 |
gcaaaggccaacaccaccattgctaaaaccggtgaggaggcggaggaagacataggtccaatagttaggggagaatg |
34431454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 34419029 - 34419205
Alignment:
| Q |
15 |
cagagagaattgcaatgcctccagagaagaagtagaaagtggacattcctgccatgccacgttttgaatggccaataggttcagtagcgaggacgaaggc |
114 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||||| || || || || ||||||||||| |
|
|
| T |
34419029 |
cagagagaattgctatgccactcgagaagaagtagaaggtggacattcctgccatgccacgttttgatgggccaatgggctcggtggcaaggacgaaggc |
34419128 |
T |
|
| Q |
115 |
gcaaaggccaacaccaccattgctaaaaccggtgaggaggcggaggaagacataggtccaatagttaggggagaatg |
191 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||||||||||||||| ||||||| ||||||| ||||||||||||| |
|
|
| T |
34419129 |
gcaaaggccaacaccgccagtgctgaaaccggtgaggaggcggaggaggacatagatccaataattaggggagaatg |
34419205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University