View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9331_low_9 (Length: 452)
Name: NF9331_low_9
Description: NF9331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9331_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 20 - 443
Target Start/End: Complemental strand, 38939028 - 38938605
Alignment:
| Q |
20 |
taaaacaaaaattaaattgtgccgattaaaataacaccaaaatgataaattcaaccatacaaatgaacttctgtaagaatatctagcttggaattcctta |
119 |
Q |
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| T |
38939028 |
taaaacaaaaattaaattgtgccgattaaaataacaccaaaatgataaattcaaccatacaaatgaacttctgtaagaatatctagcttggaattcctta |
38938929 |
T |
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| Q |
120 |
caaaacaatcataatcacaccattaactaatgggccacaccataagaactttgctttgacatttctgctttcatgaacttaaactttgtgtttaacgaat |
219 |
Q |
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| T |
38938928 |
caaaacaatcataatcacaccattaactaatgggccacaccataagaactttgctttgacatttctgctttcatgaacttaaactttgtgtttaacgaat |
38938829 |
T |
|
| Q |
220 |
tcctgaagtttaaaacagtaacggnnnnnnncttctatatataagagattaaaacattagcataaaggccatatacactagagacatggcaaacattcaa |
319 |
Q |
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| T |
38938828 |
tcctgaagtttaaaacagtaacggtttttttcttctatatataagagattaaaacattagcataaaggccatatacactagagacatggcaaacattcaa |
38938729 |
T |
|
| Q |
320 |
aaggctatagctcttgtttttcatatactgcttatatctttgcttccatttcaaatcatagcatcgataaaaacagaagcagaagctcttgtcaaatgga |
419 |
Q |
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|||| || ||||||| ||| |||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
38938728 |
aaggttaatactcttgtcttttatatactgcttatatctttgcttccattgaaaatcacagcatcaataaaaacagaagcagaagctcttgtcaaatgga |
38938629 |
T |
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| Q |
420 |
aaaatagtttatcccctcctttgc |
443 |
Q |
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| T |
38938628 |
aaaatagtttatcccatcctttgc |
38938605 |
T |
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