View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9332_low_10 (Length: 350)

Name: NF9332_low_10
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9332_low_10
NF9332_low_10
[»] chr2 (1 HSPs)
chr2 (45-340)||(4189725-4190023)


Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 45 - 340
Target Start/End: Original strand, 4189725 - 4190023
Alignment:
Q  45 ttgttgtcatttttgtattgtagtgtgttagtcgaacggacaa----acgagccgaatctaacgagttgaatagagttattcacctatctagacaagtta 140  Q
    |||||||||||||||||||||||||||||||||||||| ||||    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4189725 ttgttgtcatttttgtattgtagtgtgttagtcgaacgaacaattaaacgagccgaatctaatgagttgaatagagttattcacctatctagacaagtta 4189824  T
Q  141 aactagaactaaaagaaatattcacatcaaattggttgagtttcaaaccgaatcaattcttattgagttggggtcaaattttacggagtttgactaaatc 240  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  4189825 aactagaactaaaagaaatatacacatcaaattggttgagtttcaaatcgaatcaattcttattgagttggg-tcaaattttacggagtttgactaaacc 4189923  T
Q  241 gacttatttcatttccagtcatatttacaatattgtagaagatccaaacatgttagacaaatttggattgtctgtagcactgcacacactgtagcaacac 340  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4189924 gacttatttcatttcgagtcatatttacaatattgtagaagatccaaacatgttagacaaatttggattgtctgtagcactgcacacactgtagcaacac 4190023  T

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