View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9332_low_11 (Length: 349)
Name: NF9332_low_11
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 8734701 - 8734423
Alignment:
| Q |
1 |
gaagcattgcattcaatttcactgatgataatgatattgaaaatgtgtacatagaacatgcaaagaagtatgagtttgcagacataacttggtatccatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8734701 |
gaagcattgcattcaatttcactgatgataatgatattgaaaatgtgtacatagaacatgcaaagaagtatgagtttgcagacataacttggtatccatc |
8734602 |
T |
|
| Q |
101 |
aaggcacacggctgtttatagatacgatgtcagggttcccttagatgccgctggtgatggagtctatgatttcattggatttcaagccaatgaaatattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8734601 |
aaggcacacggctgtttatagatacgatgtcagggttcccttagatgccgctggtgatggagtctatgatttcattggatttcaagccaatgaaatattg |
8734502 |
T |
|
| Q |
201 |
gtctcgcagtcagttagagcagcaggtaataataatctcatcttgtatcgttcacaaattattgtcaagttatttataa |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8734501 |
gtctcgcagtcagttagagcagcaggtaataataatctcatcttgtatcgttcacaaattattgtcatgttatttataa |
8734423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 8715885 - 8715584
Alignment:
| Q |
1 |
gaagcattgcattcaatttcactgatgataatgatattgaaaatgtgtacatagaacatgcaaagaagtatgagtttgcagacataacttggtatccatc |
100 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||| |
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| T |
8715885 |
gaagcataacattcaatctcactgatgataatgatattgaaaacgtgtacatataacatgtaaaaaagtatgagtttgtggacataacttggtatccatc |
8715786 |
T |
|
| Q |
101 |
aaggcacacggctgtttatagatacgatgtcagggttcccttagatgccgctggtgatggagtctatgatttcattggatttcaagccaatgaaatattg |
200 |
Q |
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||||||||| |||| ||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8715785 |
aaggcacacagctgattatagatacgatttcagggtt-ccttagatgcctctggtgacggagtctatgatttcattggatttcaagccaacgaaatattg |
8715687 |
T |
|
| Q |
201 |
gtctcgcagtcagttagagcagcaggtaataataatctcatcttgtatcgttcacaaattattgtcaagttatttataactagcaataaccaattaaaga |
300 |
Q |
| |
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|| || ||||||||||||||||||||||||||| |||||||||||| |||| |||||||| ||| || | || | ||||||||||||||||||| |
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| T |
8715686 |
gtatctcagtcagttagagcagcaggtaataatgatctcatcttgtgctgttctaaaattattttcatatttctgttagcaagcaataaccaattaaaga |
8715587 |
T |
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| Q |
301 |
taa |
303 |
Q |
| |
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||| |
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| T |
8715586 |
taa |
8715584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 55 - 267
Target Start/End: Original strand, 20428487 - 20428692
Alignment:
| Q |
55 |
aacatgcaaagaagtatgagtttgcagacataacttggtatccatcaaggcacacggctgtttatagatacgatgtcagggttcccttagatgccgctgg |
154 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| | ||||||||||| |||||| ||| |
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| T |
20428487 |
aacattcaaagaagtatgagtttgcagacataacttcatat-------ggcacacagctgtttatagatacgattttagggttccctt-gatgcctctga |
20428578 |
T |
|
| Q |
155 |
tgatggagtctatgatttcattggatttcaagccaatgaaatattggtctcgcagtcagttagagcagcaggtaa-taataatctcatcttgtatcgttc |
253 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||| |||| |||||| ||||||||| |||||| |||| ||||||||| |||| |||| |
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| T |
20428579 |
tgatggagtctatgacttcattggatttcaagcaaatgaaatattgatctctcagtcatttagagcagtaggtaactaatgatctcatctagtattgttc |
20428678 |
T |
|
| Q |
254 |
acaaattattgtca |
267 |
Q |
| |
|
|||||||||||| |
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|
| T |
20428679 |
taaaattattgtca |
20428692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 8712376 - 8712238
Alignment:
| Q |
10 |
cattcaatttcactgatgataatgatattgaaaatgtgtacatagaacatgcaaagaagtatgagtttgcagacataacttggtatccatcaaggcacac |
109 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||||||||||||||||| |||||||||||||||||| ||| |||||||| ||||||| ||| ||| |||| |
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| T |
8712376 |
cattcaatttcgctgatgatagtgatat-gaaaatgtgtacatagagcatgcaaagaagtatgagattgtagacataaattggtattcattaagatacac |
8712278 |
T |
|
| Q |
110 |
ggctgtttatagatacgatgtcagggttcccttagatgcc |
149 |
Q |
| |
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|||||| ||| | || | |||||||||||||||||| |
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| T |
8712277 |
aactgtttgcggatgcaattttagggttcccttagatgcc |
8712238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 10031868 - 10031916
Alignment:
| Q |
55 |
aacatgcaaagaagtatgagtttgcagacataacttggtatccatcaag |
103 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10031868 |
aacattcaaagaagtatgattttgcagacataacttggtatccatcaag |
10031916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 10031912 - 10031998
Alignment:
| Q |
182 |
tcaagccaatgaaatattggtctcgcagtcagttagagcagcaggtaa-taataatctcatcttgtatcgttcacaaattattgtca |
267 |
Q |
| |
|
|||||||||||||||||||||||| | || |||||||||||||||| |||| ||||||||| |||| |||| |||||||||||| |
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| T |
10031912 |
tcaagccaatgaaatattggtctctcgaacatttagagcagcaggtaactaatgatctcatctagtattgttctaaaattattgtca |
10031998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 8732081 - 8732026
Alignment:
| Q |
54 |
gaacatgcaaagaagtatgagtttgcagacataacttggtatccatcaaggcacac |
109 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||| ||| ||| ||||| |
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| T |
8732081 |
gaacatgcaaagaagtatgaggttgtagacataacttggtattcattaagacacac |
8732026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 8734426 - 8734396
Alignment:
| Q |
300 |
ataaggttttgccaatggaggttggcatagc |
330 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
8734426 |
ataaggttttgccaatggaggttggcatagc |
8734396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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