View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9332_low_12 (Length: 344)
Name: NF9332_low_12
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 45021546 - 45021780
Alignment:
| Q |
10 |
atgagctgaaaattttgttttgccaaaaagagacatataattagtaccaaattgagaaatggagacaaaatcaagaaaaaacgtcaacataacatgaaag |
109 |
Q |
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| T |
45021546 |
atgagctgaaaattttgttttgccaaaaagagacatataattagtaccaaagtgagaaatggagacaaaatcaagaaaaaacgtcaacataacatgaaag |
45021645 |
T |
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| Q |
110 |
gaaacatattgaagaaaataacaaaccttcgtgtcaaaaacaacatctccatcatcaattgaactttaaatcatcaaaac------------aaataaaa |
197 |
Q |
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| T |
45021646 |
gaaacatattgaagaaaataacaaaccttcgtgtcaaaaacaacatctccatcatcaatttaactttaaatcatcaaaacaaataaacaaataaataaaa |
45021745 |
T |
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| Q |
198 |
cctagtaaacgcagttacagtgaacaataaacccc |
232 |
Q |
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| T |
45021746 |
cctagtaaacgcagttacagtgaacaataaacccc |
45021780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 45021802 - 45021886
Alignment:
| Q |
247 |
cgtttaatgaagaaaattgaaacggcaatttgtacgcaacagg-nnnnnnnnncattgttacggtgaaagattaaaagaaaatga |
330 |
Q |
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| T |
45021802 |
cgtttaatgaagaaaattgaaacggcaatttgtacgcaacaggaaaaaaaaaacattgttatggtgaaagattaaaagaaaatga |
45021886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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