View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9332_low_14 (Length: 335)
Name: NF9332_low_14
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 37484785 - 37485102
Alignment:
| Q |
18 |
ttattggctcaggtccacttccacttacttcacttgtgttagccactaatcacctacaaaacacaatttttcacaactatgactttgaccctttagccaa |
117 |
Q |
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| T |
37484785 |
ttattggctcaggtccacttccacttacttcacttgtgttagccactaatcacctacaaaacacaatttttcacaactatgactttgaccctttagccaa |
37484884 |
T |
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| Q |
118 |
ttccaaagcttcttgcttggtttcctctgatcctgaattatcaaagcgtatgnnnnnnnacaccaatgatatattggatgtttcaaatgctttgaaagaa |
217 |
Q |
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| T |
37484885 |
ttccaaagcttcttgcttggtttcctctgatcctgaattatcaaagcgtatgtttttttacaccaatgatatattggatgtttcaaatgctttgaaagaa |
37484984 |
T |
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| Q |
218 |
tatgaagttgtttatttggcagcacttgtaggaatgagtgttgaggaaaagaataggatcattgagcatttggctaagtacatggcaccaggagcactcc |
317 |
Q |
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| T |
37484985 |
tatgaagttgtttatttggcagcacttgtgggaatgagtgttgaggaaaagaataggatcattgagcatttggctaagtacatggcaccaggagcactcc |
37485084 |
T |
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| Q |
318 |
tgatgctcaggagtgctc |
335 |
Q |
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| T |
37485085 |
tgatgctcaggagtgctc |
37485102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 46098088 - 46098234
Alignment:
| Q |
85 |
ttttcacaactatgactttgaccctttagccaattccaaagcttcttgcttggtttcctctgatcctgaattatcaaagcgtatgnnnnnnnacaccaat |
184 |
Q |
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| T |
46098088 |
ttttcacaactacgacatcgaccctttagccaattcaagtgctaagcacttggtttcatctgatcctgacttgtcaaaccgtatggtttttcacaccaat |
46098187 |
T |
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| Q |
185 |
gatatattggatgtttcaaatgctttgaaagaatatgaagttgttta |
231 |
Q |
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| T |
46098188 |
gatatattggacgtgtcaaatgatttgaaagactatgaaattgttta |
46098234 |
T |
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