View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9332_low_17 (Length: 321)
Name: NF9332_low_17
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_17 |
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| [»] scaffold0137 (1 HSPs) |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 3886253 - 3885957
Alignment:
| Q |
14 |
cataatgttggtctggtagccactctagtcttactggtaacgatataaatgttcgaaggcgtttcgattcatagaggctgtcaaatttattgaaagagtc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3886253 |
cataatgttggtctggtagccactctagtcttactggtaacgatatgaatgttcgaaggcgtttcgattcatagaggctgtcaaatttattgaaagagtt |
3886154 |
T |
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| Q |
114 |
atacttgcctttgttgtatgacaaatgacgtactctttcgacactttcttgtaactttcggtcgccatacctgatacagtatgaagatgaaaccattgta |
213 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3886153 |
atacttgcctttgttttatgacaaatgacgtactctttcgacactttcttgtaactttcggtcgccatacctgatacagtatgaagatgaaaccattgta |
3886054 |
T |
|
| Q |
214 |
gctaaatcattaatgaggtcatgcattttgtagtgtacacaatcattgactgaccatcgatgtataagtgacctcgatactagttcatcaaagtatt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3886053 |
gctaaatcattaatgaggtcatgcattttgtagtgtacacaatcattgactgaccatcgatgtataagtgacctcgatactagttcatcaaagtatt |
3885957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 11497055 - 11497096
Alignment:
| Q |
182 |
acctgatacagtatgaagatgaaaccattgtagctaaatcat |
223 |
Q |
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| T |
11497055 |
acctgatacagtatgaagatgaaaccattgtagctaaatcat |
11497096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 911084 - 911138
Alignment:
| Q |
187 |
atacagtatgaagatgaaaccattgtagctaaatcattaatgaggtcatgcattt |
241 |
Q |
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||||| |||| | |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
911084 |
atacaatatggatatgaaaccattgtagctaaatcattaatgaggtcgtgcattt |
911138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 4091729 - 4091772
Alignment:
| Q |
198 |
agatgaaaccattgtagctaaatcattaatgaggtcatgcattt |
241 |
Q |
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||||||||| || |||||||||||||| |||||||||||||||| |
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| T |
4091729 |
agatgaaactatcgtagctaaatcattgatgaggtcatgcattt |
4091772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 596 - 300
Alignment:
| Q |
14 |
cataatgttggtctggtagccactctagtcttactggtaacgatataaatgttcgaaggcgtttcgattcatagaggctgtcaaatttattgaaagagtc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
596 |
cataatgttggtctggtagccactctagtcttactggtaacgatatgaatgttcgaaggcgtttagattcatagaggctgtcaaatttattgaaagagta |
497 |
T |
|
| Q |
114 |
atacttgcctttgttgtatgacaaatgacgtactctttcgacactttcttgtaactttcggtcgccatacctgatacagtatgaagatgaaaccattgta |
213 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
496 |
atacttgcctttgttatatgacaaatgacgtactctttcgacactttcttgtaactttcggtcgccatacctgatacagtatgaagatgaaaccattgta |
397 |
T |
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| Q |
214 |
gctaaatcattaatgaggtcatgcattttgtagtgtacacaatcattgactgaccatcgatgtataagtgacctcgatactagttcatcaaagtatt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
396 |
gctaaatcattaatgaggtcatgcattttgtagtgtacacaatcattgactgaccatcgatgtataagtgacctcgatactagttcatcaaagtatt |
300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 18388695 - 18388636
Alignment:
| Q |
182 |
acctgatacagtatgaagatgaaaccattgtagctaaatcattaatgaggtcatgcattt |
241 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||| || |||||||||||||| |
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| T |
18388695 |
acctgatacaatatgaagatgaaacctttgtagctaaatcatgaacgaggtcatgcattt |
18388636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 19357 - 19309
Alignment:
| Q |
193 |
tatgaagatgaaaccattgtagctaaatcattaatgaggtcatgcattt |
241 |
Q |
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|||| ||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
19357 |
tatggagatgaaaccattgtagctaaatcattgacaaggtcatgcattt |
19309 |
T |
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