View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9332_low_21 (Length: 299)
Name: NF9332_low_21
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 38485018 - 38484748
Alignment:
| Q |
17 |
atcaactagttctttagcctcgcttaaagccagtagcaactcattgcagagaagaaaacacggccaacgaataaccctaacattccaagcattgtttggc |
116 |
Q |
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| T |
38485018 |
atcaactagttctttagcctcgcttaaagccagtagcaactcattgcagagaagaaaacacggccaacgaataaccctaacattccaagcattgtttggc |
38484919 |
T |
|
| Q |
117 |
agctccagcagctcaacctctttatcagaaatgatatcttcctctctaaaggacataattatctcgttccataacaaagcaaatttcttggcatcagcct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38484918 |
agctccagcagctcaacctctttatcagaaatgatatcttcctctctaaaggacataattatctcgttccataacaaagcaaatttcttggcatcagcct |
38484819 |
T |
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| Q |
217 |
ggttagaatcgagcttcttaaaaggatgaccaagtccataccttagcttcatcctatgaattgcatcccta |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38484818 |
ggttagaatcgagcttcttaaaaggatgaccaagtccataccttagcttcatcctatgaattgcatcccta |
38484748 |
T |
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Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 284
Target Start/End: Complemental strand, 30119417 - 30119147
Alignment:
| Q |
14 |
atcatcaactagttctttagcctcgcttaaagccagtagcaactcattgcagagaagaaaacacggccaacgaataaccctaacattccaagcattgttt |
113 |
Q |
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||||| |||||||||||| |||| || | ||| || || ||||| ||||||||||||||||| |||||||||||||||| ||||||||||| || | | |
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| T |
30119417 |
atcattaactagttctttggcctgactgagagcaagcagtaactcgttgcagagaagaaaacatggccaacgaataacccgaacattccaagagttctgt |
30119318 |
T |
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| Q |
114 |
ggcagctccagcagctcaacctctttatcagaaatgatatcttcctctctaaaggacataattatctcgttccataacaaagcaaatttcttggcatcag |
213 |
Q |
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|||||||||||||||||||||||| | ||||| || ||||| ||||| ||||| |||| ||||||||||||||||| ||||||||| || ||||| ||| |
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| T |
30119317 |
ggcagctccagcagctcaacctctctgtcagagataatatcctcctccctaaaagacaaaattatctcgttccatatcaaagcaaacttgttggcctcaa |
30119218 |
T |
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| Q |
214 |
cctggttagaatcgagcttcttaaaaggatgaccaagtccataccttagcttcatcctatgaattgcatcc |
284 |
Q |
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|||||||||| ||||||||| | | || ||||||| |||||||| ||||||| |||||| || |||||| |
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| T |
30119217 |
cctggttagactcgagcttcctgtagggccgaccaagcccatacctgagcttcaacctatggatggcatcc |
30119147 |
T |
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