View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9332_low_22 (Length: 299)
Name: NF9332_low_22
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 29645644 - 29645368
Alignment:
| Q |
16 |
aaatattcggaaaaaattcacctagagtgttgtaatcacttcttttatatgtaatgatgatactagtgtattggaaaaagtgttaaacataacggtgtat |
115 |
Q |
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| T |
29645644 |
aaatattcggaaaaaattcacctagagtgttgtaatcacttcttttatatgtaatgatgatactagtgtattggaaaaagtgttaaacatagcggtgtat |
29645545 |
T |
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| Q |
116 |
tgaaaaatatgagctagaaagtgtattaatagaattctcaaacaggttttgttttgcttaccatcctctgcagtgagtactcccttcacaagaattggaa |
215 |
Q |
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|||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29645544 |
cgaaaaaaatgtgttagaaagtgtattaatagaattctcaaacaggttttgttttgcttaccatcctctgcagtgagtactcccttcacaagaattggaa |
29645445 |
T |
|
| Q |
216 |
ggctagtgatagtctgaagccacttcacatcctgcacaaaagtaacaaagacaactcaatatcattcgtaccacgaaa |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
29645444 |
ggctagtgatagtctgaagccacttcacatcctgcacaaaagtaac-aagacaactcaatatcattcgtacctcgaaa |
29645368 |
T |
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