View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9332_low_23 (Length: 282)
Name: NF9332_low_23
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 35690602 - 35690855
Alignment:
| Q |
13 |
cagatggtataaaatgtgctaaagaaacaactccagttctcaacatgtcgacccctttgaatgtgggcacagatcgtcgccttttcgtcattgccaacaa |
112 |
Q |
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| T |
35690602 |
cagatggtataaaatgtgctaaagaaacaactccagttctcaacatgtcgacccctttgaatgtgggcacagatcgtcgccttttcgtcattgccaacaa |
35690701 |
T |
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| Q |
113 |
tgtaacaaaatcaatgaaggtgccagtgtatttccttaacatcacaaccttatcagagtatcgaaaagatgcacatacctctgtttataccatacgtcaa |
212 |
Q |
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| T |
35690702 |
tgtaacaaaatcaatgaaggtgccagtgtatttccttaacatcacaaccttatcagagtatcgaaaagatgcgcatacctctgtttataccatacgtcaa |
35690801 |
T |
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| Q |
213 |
gggaagatgctaacacctgaacaacaagctgatccaactacttatgcagattgt |
266 |
Q |
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| T |
35690802 |
gggaagatgctaacacctgaacaacaagctgatccaactacttatgcagattgt |
35690855 |
T |
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Back To:
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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 31823108 - 31823358
Alignment:
| Q |
16 |
atggtataaaatgtgctaaagaaacaactccagttctcaacatgtcgacccctttgaatgtgggcacagatcgtcgccttttcgtcattgccaacaatgt |
115 |
Q |
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|||| ||||||||||| || ||||| || ||| ||||||||||||| || || | | || |||||||||| ||| ||||| |||||||| || ||||| |
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| T |
31823108 |
atggaataaaatgtgcaaaggaaactacaccaattctcaacatgtctactccagtacaagtaggcacagatcatcgtctttttgtcattgctaaaaatgt |
31823207 |
T |
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| Q |
116 |
aacaaaatcaatgaaggtgccagtgtatttccttaacatcacaaccttatcagagtatcgaaaagatgcacatacctctgtttataccatacgtcaaggg |
215 |
Q |
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| T |
31823208 |
gacaaaatcaacaaaagtgaaagtggattttatatacatcaccaaattatcagaatatagaaaagatgcacatacttctgtttacacaatacgtcaaggc |
31823307 |
T |
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| Q |
216 |
aagatgctaacacctgaacaacaagctgatccaactacttatgcagattgt |
266 |
Q |
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|| || |||| || || ||||||||| | || ||||||||||||||||| |
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| T |
31823308 |
aaagtgttaactccagagcaacaagctaaccctgctacttatgcagattgt |
31823358 |
T |
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