View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9332_low_27 (Length: 253)
Name: NF9332_low_27
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 34690755 - 34690994
Alignment:
| Q |
14 |
cagagagccagtaggcaatagtattggctcaaataataagcaaaaccattgataataaataacagatataattaaattgacaattttagtctccttaaaa |
113 |
Q |
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| T |
34690755 |
cagagagccagtaggcaatagtattggctcaaataataagcaaaaccattgataataaataacagatataattaaattgacaattttagtcaccttaaaa |
34690854 |
T |
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| Q |
114 |
ttaactacatgtctagattgacgatgaaatagcgaaatcacgacaccacgattttgacaaaaactatattttagagcttttacaaaatcttggtattagt |
213 |
Q |
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| T |
34690855 |
ttaactgcatgtctagattgacgatgaaatagcgaaatcacgccaccacgattttgagaaaaactatattttagagcttttacaaaatcttggtattagt |
34690954 |
T |
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| Q |
214 |
ataatttgacaaactcagtgctcatttaaatatgaactat |
253 |
Q |
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| T |
34690955 |
ataatttgacaaattcagtgctcatttaaatatgaactat |
34690994 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 3675628 - 3675667
Alignment:
| Q |
163 |
gattttgacaaaaactatattttagagcttttacaaaatc |
202 |
Q |
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| T |
3675628 |
gattttgacaaaaactatactttagagctttaacaaaatc |
3675667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 27858184 - 27858229
Alignment:
| Q |
157 |
caccacgattttgacaaaaactatattttagagcttttacaaaatc |
202 |
Q |
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| T |
27858184 |
caccacgattttgacaaaagctacattttagagctttatcaaaatc |
27858229 |
T |
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