View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9332_low_30 (Length: 248)
Name: NF9332_low_30
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 3450214 - 3449983
Alignment:
| Q |
1 |
agctgctggggatgagacaattgaactaagtgttgaatcatagttaaggttttggtccgttgacttgtcccaatttgggttgaaaaaataatcttgggtt |
100 |
Q |
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| T |
3450214 |
agctgctggggatgagacaattgaactaagtgttgaatcatagttaaggttttggtccgttgacttgtcccaatttgggttgaaaaaacaatcttgggtt |
3450115 |
T |
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| Q |
101 |
tggtaaggttcaaatccagcatttaaaaagaattggttttccataatgttatgatgaattatgagacaacaaaatgaacttaattttgaggtagnnnnnn |
200 |
Q |
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| T |
3450114 |
tggtaaggttcaaatccagcatttaaaaagaattggttttccataatgttatgatgaattatgagacaacaaaatgaacttaattttgaggtagtttttt |
3450015 |
T |
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| Q |
201 |
nngcttttggtttggtttaagtgttttatatg |
232 |
Q |
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| T |
3450014 |
ttgcttttggtttggtttaagtgttttatatg |
3449983 |
T |
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