View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9332_low_31 (Length: 246)
Name: NF9332_low_31
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 15505867 - 15505640
Alignment:
| Q |
1 |
tcttgcatacacgttcaattttaagaaaaatagaaaagggttgttaattgaccgatacttgaaagaaagtcacataagtatcgttcaagacttctttcgc |
100 |
Q |
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| T |
15505867 |
tcttgcatacacgttcaattttaagaaaa-tagaaaagggttgttaattgaccgatacttgaaagaaagtcacataaatatcgttcaagacttcttttgc |
15505769 |
T |
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| Q |
101 |
ttgcgcatgctagcctttgcctatcttatattctccgatagtaggatttcatatacaattttaaattcattgtagtgaaagcctttatatagacaaagaa |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15505768 |
ttgcgcatgctagcctttgcttatcttatattctccgatagtaggatttcatatacaattttaaattcattgtagtgaaagcctttatatagacaaagaa |
15505669 |
T |
|
| Q |
201 |
tgtcattaacaccagcggaacccaaaacc |
229 |
Q |
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|||||||||||| |||||||||||||||| |
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| T |
15505668 |
tgtcattaacactagcggaacccaaaacc |
15505640 |
T |
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