View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9332_low_4 (Length: 456)
Name: NF9332_low_4
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 3236288 - 3235856
Alignment:
| Q |
17 |
atgtagctcatttccctatgatataacgagatgttgattccctagttcgacggtgggtcagtatcggtcatcatgaccgtttgattaagataggacgagt |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3236288 |
atgtagctcatttccctatgatataatgagatgttgattccttagatcgacagtgggtcagtatcggtcatcatgaccgtttgattaagataggacgagt |
3236189 |
T |
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| Q |
117 |
cacatttcaacaatgtatttttgacccgatttatcaaagtggaaatatgcgtcgt-----cttgatttgatgataaaaattgtgtaactaagctgaatgc |
211 |
Q |
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| T |
3236188 |
cacatttcaacaatgtatttttgacctgatttatcaaagtgggaatatgcgtcgtttaatcttgatttgatgataaaaattgtgtaactaagttgaatgc |
3236089 |
T |
|
| Q |
212 |
ataatttcgtttttgtcgagaaatcaaatcttacaaaatgtttgtgttgtcactaaccttgtccttttggtagcaatggagcttatggcatatagagtta |
311 |
Q |
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| T |
3236088 |
ataatttcgtttttgtcgagaaatcgaatcttacaaaatgtttgtgttgtcactaaccttgtccttttggtagcaatggagcttatggcatatagagtta |
3235989 |
T |
|
| Q |
312 |
gtgagttgaagaagatgcttgtattgtggattgcatatttgggcctcagaaatcaaatggccaccacttagatttattatttgtaccaaaagctcagctt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
3235988 |
gtgagttgaagaagatgcttgtattgtggattgcatatttggtcctcagaaatcaaatggccagcacttaggtttattatttgtaccaaaagctcagctt |
3235889 |
T |
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| Q |
412 |
ctccttcacatttgtctccttcactttgccaac |
444 |
Q |
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| T |
3235888 |
ctccttcacatttgtctccttcactttgccaac |
3235856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 254 - 444
Target Start/End: Original strand, 3176778 - 3176968
Alignment:
| Q |
254 |
tgtgttgtcactaaccttgtccttttggtagcaatggagcttatggcatatagagttagtgagttgaagaagatgcttgtattgtggattgcatatttgg |
353 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3176778 |
tgtgttgtcactaaccttgtccttttgatagcaatggagcttatggcatatagagttagtgagttgaagaagatgcttgtattgtggattgaatatttgg |
3176877 |
T |
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| Q |
354 |
gcctcagaaatcaaatggccaccacttagatttattatttgtaccaaaagctcagcttctccttcacatttgtctccttcactttgccaac |
444 |
Q |
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| T |
3176878 |
tcctcagaaatcaaatgcccagcacttaggtttattatttgtaccaaaagctcagcttctccttcacatttgtctccttcattttgccaac |
3176968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 86 - 353
Target Start/End: Complemental strand, 3216709 - 3216438
Alignment:
| Q |
86 |
atcatgaccgtttgattaagataggacgagtcacatttcaacaatgtatttttgacccgatttatcaaagtggaaatatgcgtcg-----tcttgatttg |
180 |
Q |
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|||| ||| ||||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||||| ||||| ||| | |||||||||| |
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| T |
3216709 |
atcaggactgtttgattaagataggacgagtcgcattttaacaatatatttttgacccga-ttatcaaagtgggaatatacgttgtctaatcttgatttg |
3216611 |
T |
|
| Q |
181 |
atgataaaaattgtgtaactaagctgaatgcataatttcgtttttgtcgagaaatcaaatcttacaaaatgtttgtgttgtcactaaccttgtccttttg |
280 |
Q |
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| T |
3216610 |
atgatctaaattgcgaaactaaatcaaatgcataactacgtttttgtcgagcattttaatcttgcaaaatgttcgtgttgtcactaaccttgtcattttg |
3216511 |
T |
|
| Q |
281 |
gtagcaatggagcttatggcatatagagttagtgagttgaagaagatgcttgtattgtggattgcatatttgg |
353 |
Q |
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|||||| ||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |||||||| |
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| T |
3216510 |
atagcaacggagcttatggcatatagagtgagtgagttgtagaagatgcttctattgtggattgaatatttgg |
3216438 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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