View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9332_low_41 (Length: 222)
Name: NF9332_low_41
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_41 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 22364259 - 22364442
Alignment:
| Q |
17 |
cataggggataaatgatgatggtctttgaataatatagaaatacatgagaaatgtgtttgtaatgatggtattcattccaagccatccaaacaattgaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364259 |
cataggggataaatgatgatggtctttgaataatatagaaatacatgagaaatgtgtttgtaatgatggtattcattccaagccatccaaacaattgaaa |
22364358 |
T |
|
| Q |
117 |
cctacggtttgaagaaagaaaagaaaaggagtatgtcttagagctgagatacaattgcatgatcacttaataaaaatacggacc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364359 |
cctacagtttgaagaaagaaaagaaaaggagtatgtcttagagctgagatacaattgcatgatcacttaataaaaatacggacc |
22364442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University