View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9332_low_5 (Length: 449)
Name: NF9332_low_5
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 21 - 442
Target Start/End: Complemental strand, 26790806 - 26790385
Alignment:
| Q |
21 |
cttggtataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaatt |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790806 |
cttggtataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaatt |
26790707 |
T |
|
| Q |
121 |
gttatggagattgtcacaagcaaggtaaaaacaaggttgatcctttaatgaatatattggccaattataatataatttattatatgaattcatcaatgtg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790706 |
gttatggagattgtcacaagcaaggtaaaaacaaggttgatcctttaatgaatatattggccaattataatataatttattatatgaattcatcaatgtg |
26790607 |
T |
|
| Q |
221 |
cttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacac |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
26790606 |
cttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtgcacgtacacac |
26790507 |
T |
|
| Q |
321 |
atttgtgttctattgcatattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcaccctt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790506 |
atttgtgttctattgcatattgttacctgcaactgttatggttcctgaggttgtggtccctaaatggggaactgtttatgtcccttccatcatcaccctt |
26790407 |
T |
|
| Q |
421 |
cttaaagctgttggaacaccaa |
442 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
26790406 |
cttaaagctgttggaacaccaa |
26790385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 26 - 442
Target Start/End: Complemental strand, 26817507 - 26817095
Alignment:
| Q |
26 |
tataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttat |
125 |
Q |
| |
|
||||||||||||| ||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| | ||| |
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|
| T |
26817507 |
tataggttaaaaatgaattgccaagtacatttaaggcttataggtaccaacaacatcgatggtcatgtgggccagccaatctctttagaaaaatggctat |
26817408 |
T |
|
| Q |
126 |
ggagattgtcacaagcaaggtaaaaacaaggttgatcctttaatgaatatattggccaattataatataatttattatatgaattcatcaatgtgcttgt |
225 |
Q |
| |
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||||||| | | ||||||||||| | || |||||| ||||| | | | | |||||||| ||| |||| || | ||||||| |||| ||||| |
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| T |
26817407 |
ggagattcttagaagcaaggtaattatt---ttaatccttgt-tgaattcactagtcgattataatttaacttatgatctaaattcatgcatgtccttgt |
26817312 |
T |
|
| Q |
226 |
ttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttg |
325 |
Q |
| |
|
||||| | | |||||||||||||||||||| ||||||| || ||||||||| || |||||||||| ||| |||||||||||| || ||||||||||||| |
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| T |
26817311 |
ttaatatgtctattgcagaaagtgtctttgtggaagaagttatatattgtttgcaattttttctttgttcaaaagattgtggtgcacatacacacatttg |
26817212 |
T |
|
| Q |
326 |
tgttctattgcatattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcacccttcttaa |
425 |
Q |
| |
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||||||||||| | |||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26817211 |
tgttctattgcgttctgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgtttatgtcccttccatcatcacccttctaaa |
26817112 |
T |
|
| Q |
426 |
agctgttggaacaccaa |
442 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
26817111 |
agctgttggaacaccaa |
26817095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 26 - 419
Target Start/End: Complemental strand, 26784431 - 26784040
Alignment:
| Q |
26 |
tataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttat |
125 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| |||| |
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|
| T |
26784431 |
tataggttaaaaatgaattgcccagtactttaaatgcctatagataccaacaacatcgatggtcatgtggaccggccaatcttttcaggaaaatgattat |
26784332 |
T |
|
| Q |
126 |
ggagattgtcacaagcaaggtaaaaacaaggttgatcctttaatgaatatattggccaattataatataatttattatatgaat--tcatcaatgtgctt |
223 |
Q |
| |
|
||||||| |||||| |||||||| ||||| || || ||||||| | | | | ||| ||| ||| |||| ||| ||| |||| || |||| |
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|
| T |
26784331 |
ggagattctcacaaacaaggtaatt----ggttggtctcttgatgaatacactacctacttacaatttaaattatgataaaaatattcattcatctgcta |
26784236 |
T |
|
| Q |
224 |
gtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatt |
323 |
Q |
| |
|
|||||||| | || ||||||||||||||||| |||||| | |||| |||||||||||||||||| | || ||||||||||| || ||| ||||||| |
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| T |
26784235 |
atttaatttgtctatggcagaaagtgtctttgtggaagaaaacatatatggtttacagttttttctttgtccggaagattgtggttcacataaacacatt |
26784136 |
T |
|
| Q |
324 |
tgtgttctattgcatattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcaccct |
419 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
26784135 |
tgtgttatattgcattgtgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgtttatatccctaccatcatcaccct |
26784040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 236 - 442
Target Start/End: Complemental strand, 26830944 - 26830738
Alignment:
| Q |
236 |
cattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattg |
335 |
Q |
| |
|
||||||||||||||||||||| ||||||| || || |||||||||||||||||||| |||| |||||||||| ||| || |||||||||| |||||||| |
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|
| T |
26830944 |
cattgcagaaagtgtctttgtggaagaagatatatgttgtttacagttttttctttgttcggaagattgtggcccacatcaacacatttgttttctattg |
26830845 |
T |
|
| Q |
336 |
catattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcacccttcttaaagctgttgga |
435 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| | || ||||||||| |
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| T |
26830844 |
cattgtgttacctgcaactgttatggtacctgaggttgtggtccctaaatggggagctgtttatatcccttccatcatcacccttttaaatgctgttgga |
26830745 |
T |
|
| Q |
436 |
acaccaa |
442 |
Q |
| |
|
|| |||| |
|
|
| T |
26830744 |
actccaa |
26830738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 26831152 - 26831030
Alignment:
| Q |
26 |
tataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttat |
125 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || || |
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|
| T |
26831152 |
tataggttaaaaacgaattgccaagtacattaaaagcctttaggtaccaacaacatcgatggtcatgtggaccagccaatcttttcagaaaaatggtaat |
26831053 |
T |
|
| Q |
126 |
ggagattgtcacaagcaaggtaa |
148 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
26831052 |
ggagattgtcacaaacaaggtaa |
26831030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 442
Target Start/End: Original strand, 41920374 - 41920580
Alignment:
| Q |
236 |
cattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattg |
335 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||| | |||||||||| |||||| |||| || | | | || || | || |||||||| ||||| |
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|
| T |
41920374 |
cattgcagaaagtgtccttgtggaagaagatacatgtaatttacagtttcttctttgttcggaaagtgatagcacacatcaatacgtttgtgttttattg |
41920473 |
T |
|
| Q |
336 |
catattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcacccttcttaaagctgttgga |
435 |
Q |
| |
|
||| | |||||||||| ||| |||||||||| |||| || || ||||||||| |||||||| | ||||| | ||||| |||||||| || |||||| |
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|
| T |
41920474 |
cattgttctacctgcaacagttttggtacctgaagttgcagtcccaaaatggggagctgtttatattccttcagttatcactcttcttaatgcagttgga |
41920573 |
T |
|
| Q |
436 |
acaccaa |
442 |
Q |
| |
|
|| |||| |
|
|
| T |
41920574 |
actccaa |
41920580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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