View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9332_low_6 (Length: 443)
Name: NF9332_low_6
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 28846188 - 28846367
Alignment:
| Q |
1 |
ggaggattttgagaattttcatttattggaggatgttgataattttgcatatagtgaaaataagcttcccaattgaattgattgggatccatttgatatg |
100 |
Q |
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| T |
28846188 |
ggaggattttgagaattttcatttataagaggatgttgataattttgcatatagtgaaaataagcttgccaattaaattgattgggatccatttgatatg |
28846287 |
T |
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| Q |
101 |
tgcaaaattgagtaaaaataaaacacattttataggcaccatgaaacaaatggtaaaaattgtttagatgttggacaatt |
180 |
Q |
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| T |
28846288 |
tgcaaaattgagtaaaaataaaacacattttataggcaccatgaaacaaacggtaaaaattgtttagatgttggacaatt |
28846367 |
T |
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Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 176 - 377
Target Start/End: Original strand, 28846427 - 28846636
Alignment:
| Q |
176 |
caatttacaggcctaaaacatggtcaaaaattaattctacatgcctttccaacagttacataattaattcattttgtgcttttgctttagagcagctatc |
275 |
Q |
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| T |
28846427 |
caatttacaggcctaaaaaatggacaaaaattaattctacatgcctttccaatggttacataattaattcattttgtgcttttgctttaaagcagttatc |
28846526 |
T |
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| Q |
276 |
t------ataataatatatatgacttaaagatttcataagtcatgaggccaagaata--atatatatgactttatttgcaaatgaactttggctttttca |
367 |
Q |
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| T |
28846527 |
tataataataataatatatatgacttgaagatttccgaagtcatgaggccaagaataatatatatatgactttatttgcaaatgagctttggcttttcca |
28846626 |
T |
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| Q |
368 |
tgttctgctg |
377 |
Q |
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| T |
28846627 |
tgttctgctg |
28846636 |
T |
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