View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9332_low_8 (Length: 415)
Name: NF9332_low_8
Description: NF9332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9332_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 400
Target Start/End: Complemental strand, 13608723 - 13608337
Alignment:
| Q |
14 |
cagagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcacttcctctaagttttct |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608723 |
cagagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcacttcctctaagttttct |
13608624 |
T |
|
| Q |
114 |
ttgaatctttcttcatgcttttgaaaggctttttcataatctccgctttgctttcgtaccgcagatggactcacatcatagaaaataggtagaacagttt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13608623 |
ttgaatctttcttcatgcttttgaaaggctttttcataatctccgctttgctttcgtaccgcagatggactcgcatcatagaaaataggtagaacagttt |
13608524 |
T |
|
| Q |
214 |
gtcctgatacttcaaagtattcagcaatttttgccagttcttgtaagcaccatgtggaagaagcatagtttcttgagaagataacaatcaaaatatggga |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608523 |
gtcctgatacttcaaagtattcagcaatttttgccagttcttgtaagcaccatgtggaagaagcatagtttcttgagaagataacaatcaaaatatggga |
13608424 |
T |
|
| Q |
314 |
tccttcaatggcttgttcaagcttggatgatatatgttccccnnnnnnnaggtttgtatcatctctgaatgcaacaatgtcattttt |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13608423 |
tccttcaatggcttgttcaagcttggatgatatatgttcccctttttttaggtttgtatcatctctgaatgcaacaatgtcattttt |
13608337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 6472928 - 6473221
Alignment:
| Q |
17 |
agaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcacttcctctaagttttctttg |
116 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
6472928 |
agaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcactgcctctaagtttcctttg |
6473027 |
T |
|
| Q |
117 |
aatctttcttcatgcttttgaaaggctttttcataatctccgctttgctttcgtaccgcagatggactcacatcatagaaaataggtagaacagtttgtc |
216 |
Q |
| |
|
||||||||| |||||| |||||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6473028 |
aatctttctccatgctcaagaaagggtttttcataatctccggtttgttttcgtacctcagatggactcacatcatagaaaataggtagaacagtttgtc |
6473127 |
T |
|
| Q |
217 |
ctgatacttcaaagtattcagcaatttttgccagttcttgtaagcaccatgtggaagaagcatagtttcttgagaagataacaatcaaaatatg |
310 |
Q |
| |
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|| ||| | | | | |||||||| ||| ||| |||||| ||||||||||||||||||||||||||| ||||||| || |||||||| ||||| |
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| T |
6473128 |
cttgtacatggatgcaatcagcaatatttaccaattcttgcaagcaccatgtggaagaagcatagttttttgagaaaattacaatcaagatatg |
6473221 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 31244699 - 31244361
Alignment:
| Q |
17 |
agaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcacttcctctaagttttctttg |
116 |
Q |
| |
|
|||||| |||||||||| |||| | | ||||||||||||||| | ||||||||||| ||||||||| |||||||||||||||| |||||| ||| ||||| |
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| T |
31244699 |
agaaaagactacttactgatcccttacatcccaaccagagagttcggctacttgtgctagggctcctctccatctttgcactttctctaaatttcctttg |
31244600 |
T |
|
| Q |
117 |
aatctttcttcatgcttttgaaaggctttttcataatctccgctttgctttcgtaccgcagatggactcacatcatagaaaataggtagaacagtttgtc |
216 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| |||||| |
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| T |
31244599 |
aatctttcttcatgatccctaaaggctttttcataatctccgctttgctttcgcacctcagatggatccacatcatagaaaataggtagaacaatttgtc |
31244500 |
T |
|
| Q |
217 |
ctgatacttcaaagtattcagcaatttttgccagttcttgtaagcaccatgtggaagaagcatagtttcttgagaagataacaatcaaaatatgggatcc |
316 |
Q |
| |
|
||| |||||||| | |||||||||| ||| | ||||| | |||||||| || |||||||||||||| ||||| |||||||||||||||||| ||||||| |
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|
| T |
31244499 |
ctgttacttcaatgcattcagcaatctttactagttccttcaagcaccacgttgaagaagcatagttccttgaaaagataacaatcaaaatacgggatcc |
31244400 |
T |
|
| Q |
317 |
ttcaatggcttgttcaagcttggatgatatatgttcccc |
355 |
Q |
| |
|
|||||| |||||| ||||| |||||||||| |||||| |
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|
| T |
31244399 |
ttcaatagcttgtagaagctcagatgatatattttcccc |
31244361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 31150836 - 31150922
Alignment:
| Q |
44 |
atcccaaccagagagattggctacttgtgttagggctcccctccatctttgcacttcctctaagttttctttgaatctttcttcatg |
130 |
Q |
| |
|
|||||| |||||||||||||| |||||||| || ||| |||||||||||||||| || ||||||| || ||||||||||||||| |
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|
| T |
31150836 |
atcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttcatg |
31150922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 31159718 - 31159784
Alignment:
| Q |
28 |
cttacttatccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatctttg |
94 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| ||||||||||| | ||||||||||||| |
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|
| T |
31159718 |
cttacttatgatgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttg |
31159784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 31496575 - 31496522
Alignment:
| Q |
44 |
atcccaaccagagagattggctacttgtgttagggctcccctccatctttgcac |
97 |
Q |
| |
|
||||||||||||||||| || |||||| |||| ||| |||||||||||||||| |
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|
| T |
31496575 |
atcccaaccagagagatcagcgacttgtattagagcttccctccatctttgcac |
31496522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 14724214 - 14723997
Alignment:
| Q |
17 |
agaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcacttcctctaagttttctttg |
116 |
Q |
| |
|
||||||||| ||||||| |||||| |||| ||| |||| || ||||||||||||| || ||||||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
14724214 |
agaaaatacaacttactgatcctttatattccagccaggga--ttggctacttgtgctaaggctcccctccatatttgcaaatcctctaaattttctttg |
14724117 |
T |
|
| Q |
117 |
aatctttcttcat--------gcttttgaaaggctttttcataatctccgctttgctttcgtaccgcagatggactcacatcatagaaaataggtagaac |
208 |
Q |
| |
|
|||||| |||||| |||| ||||| ||||||||||||| |||| ||| |||||||||| ||||||||||| | |||||||||||||||||||| |
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|
| T |
14724116 |
aatcttgcttcattgattcatgcttctgaaaagctttttcataatttccgtttttctttcgtacctcagatggactcccgtcatagaaaataggtagaac |
14724017 |
T |
|
| Q |
209 |
agtttgtcctgatacttcaa |
228 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
14724016 |
aatttgtcctgatacttcaa |
14723997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 17599636 - 17599853
Alignment:
| Q |
17 |
agaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcacttcctctaagttttctttg |
116 |
Q |
| |
|
||||||||| ||||||| |||||| |||| ||| |||| || ||||||||||| |||| ||| ||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
17599636 |
agaaaatacaacttactgatcctttatattccagccaggga--ttggctacttgagttaaggcacccctccatatttgcaaatcctctaaattttctttg |
17599733 |
T |
|
| Q |
117 |
aatctttcttcat--------gcttttgaaaggctttttcataatctccgctttgctttcgtaccgcagatggactcacatcatagaaaataggtagaac |
208 |
Q |
| |
|
|||||| |||||| |||| ||||| ||||||||||||| |||| ||| |||||||||| ||||||||||| | |||||||||||||||||||| |
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|
| T |
17599734 |
aatcttgcttcattgattcatgcttctgaaaagctttttcataatttccgtttttctttcgtacctcagatggactcccgtcatagaaaataggtagaac |
17599833 |
T |
|
| Q |
209 |
agtttgtcctgatacttcaa |
228 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
17599834 |
agtttgtcctgatagttcaa |
17599853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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