View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9333_low_1 (Length: 687)
Name: NF9333_low_1
Description: NF9333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9333_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 290 - 661
Target Start/End: Complemental strand, 27122794 - 27122423
Alignment:
| Q |
290 |
ggattaattacatatgaatagaagacaaacggacaatatgttgcaccgttggatctttttggtgtatatataatcatagaaacatagttttgtgagatac |
389 |
Q |
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| T |
27122794 |
ggattaattacatatgaaaagaagacaaacagacaatatgttgcacagttagatctttttggtgtatatataatcatagaaacatagttttgtgagatac |
27122695 |
T |
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| Q |
390 |
aatggaaaatatcattatcataggtactaatcattcattatgattctgatgatcatcacgtccacgacacctatttataggggagcaacctcgagtgtaa |
489 |
Q |
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| T |
27122694 |
aatggaaaatatcattatcataggtactaatcattcattatgattctgatgatcatcacgtccacgacacctatttataggggagcaacctcgagtgtaa |
27122595 |
T |
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| Q |
490 |
tttccttctgtatcattataatgatgatgattttttcttgatctcttctctatatctttatatgaaatttctccctcgaccagattgttctggtttaaca |
589 |
Q |
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| T |
27122594 |
tttccttctgtatcattataatgatgatgattttttcttgatctcttctctatatctttaaatgaaatttctccctcgaccagattgttctggtttaaca |
27122495 |
T |
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| Q |
590 |
taaccatactaattaggagaaaagaaatgaacaataccttcataatgagaaaattatatatataggtattgt |
661 |
Q |
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| T |
27122494 |
taaccatactaattaggagaaaagaaatgaacaataccttcatgatgagaaaattatatatataggtattgt |
27122423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 27123097 - 27122900
Alignment:
| Q |
40 |
attatcaaatctccataaagtcatttttccatctcaattgtaattacaagaaacatactctagatttttacttaaggaatcagaaaaaataaataa-ggt |
138 |
Q |
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| T |
27123097 |
attatcaaatctccataaaatcattttgcaatctgaattataattaccagaaagatactctatatttttacttgaggaatcaggaaaaataaataaaggt |
27122998 |
T |
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| Q |
139 |
caaacttgaagagcaacgcaaagaaagtaaattatttatgccagaaatataaggaagacttatgccaaagattgcacaaacttaatacaaaggggaac |
236 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27122997 |
caaacttgaagagcaacacaaagaaagtaaattatttttgccagaaatataagaaagacttatgccaaagattgcacaaacttaatacaaagaggaac |
27122900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 2601690 - 2601723
Alignment:
| Q |
292 |
attaattacatatgaatagaagacaaacggacaa |
325 |
Q |
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| T |
2601690 |
attaattacacatgaatagaagacaaacggacaa |
2601723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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