View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9333_low_3 (Length: 373)

Name: NF9333_low_3
Description: NF9333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9333_low_3
NF9333_low_3
[»] chr7 (16 HSPs)
chr7 (24-206)||(39337938-39338120)
chr7 (22-157)||(39538549-39538684)
chr7 (24-206)||(39349115-39349297)
chr7 (22-175)||(39365586-39365739)
chr7 (24-230)||(39564685-39564900)
chr7 (22-143)||(39547927-39548048)
chr7 (39-122)||(39589693-39589776)
chr7 (43-121)||(39575457-39575535)
chr7 (212-326)||(39338354-39338469)
chr7 (37-121)||(39622462-39622546)
chr7 (193-243)||(6366199-6366249)
chr7 (212-273)||(39353197-39353259)
chr7 (193-248)||(5376308-5376363)
chr7 (177-248)||(36853097-36853168)
chr7 (193-230)||(35169991-35170028)
chr7 (176-233)||(46937003-46937060)
[»] chr4 (5 HSPs)
chr4 (41-120)||(2886663-2886742)
chr4 (38-120)||(2897632-2897714)
chr4 (199-263)||(37848421-37848486)
chr4 (195-248)||(1132170-1132223)
chr4 (195-232)||(21329834-21329871)
[»] chr2 (6 HSPs)
chr2 (45-113)||(44211408-44211476)
chr2 (45-113)||(44234392-44234460)
chr2 (45-88)||(44223595-44223638)
chr2 (186-273)||(10231857-10231945)
chr2 (174-219)||(9529529-9529574)
chr2 (176-267)||(33657404-33657496)
[»] chr8 (3 HSPs)
chr8 (193-248)||(3017471-3017526)
chr8 (197-248)||(10744258-10744309)
chr8 (177-263)||(26762851-26762938)
[»] chr6 (1 HSPs)
chr6 (193-248)||(18361298-18361353)
[»] scaffold0929 (1 HSPs)
scaffold0929 (193-243)||(3930-3980)
[»] chr1 (2 HSPs)
chr1 (178-248)||(14303945-14304015)
chr1 (195-263)||(32102313-32102381)
[»] chr5 (3 HSPs)
chr5 (193-248)||(7705330-7705385)
chr5 (197-249)||(18871011-18871063)
chr5 (194-246)||(35056825-35056877)
[»] chr3 (1 HSPs)
chr3 (186-247)||(11092822-11092883)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 39337938 - 39338120
Alignment:
Q  24 acaaatcataataggaaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgccacaggtaatgt 123  Q
    |||||||||| ||||||||  |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  39337938 acaaatcatagtaggaaaaagggaatggttcttccttttgaaccacattctataacctttgatgaagttacatattctgtagacatgccacaggtaatgt 39338037  T
Q  124 agaaacctaataaataaagagttaaattttgataaactggcagtgtaaaaagcaaatcacagtcaatcacatgtgtgacttta 206  Q
    ||||||| | | |||||| |||||||||| |||| |||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  39338038 agaaaccaattgaataaaaagttaaatttcgatacactgtcagtgtaaaaagcaaatcacactcaattacatgtgtgacttta 39338120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 39538684 - 39538549
Alignment:
Q  22 agacaaatcataataggaaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgccacaggtaat 121  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39538684 agacaaaccatagaaggaaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagtttcatattctgtagacatgccacaggtaat 39538585  T
Q  122 gtagaaacctaataaataaagagttaaattttgata 157  Q
    ||||||||| ||||||||||||||| ||||||||||    
T  39538584 gtagaaaccgaataaataaagagtttaattttgata 39538549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 39349115 - 39349297
Alignment:
Q  24 acaaatcataataggaaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgccacaggtaatgt 123  Q
    |||||||||| ||||||||  |||||||||||||| |||||||||||||| || |||||||||||||||||||||||| |||||||||| |||||||| |    
T  39349115 acaaatcatagtaggaaaaagggaatggttcttccttttgaaccacattctataacctttgatgaagttacatattctatagacatgccgcaggtaatct 39349214  T
Q  124 agaaacctaataaataaagagttaaattttgataaactggcagtgtaaaaagcaaatcacagtcaatcacatgtgtgacttta 206  Q
    ||||||| | | |||||| |||||||||| |||| |||| || |||||||||||||||||| ||||| ||||| || ||||||    
T  39349215 agaaaccaattgaataaaaagttaaatttcgatacactgtcaatgtaaaaagcaaatcacactcaattacatgagtaacttta 39349297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 175
Target Start/End: Original strand, 39365586 - 39365739
Alignment:
Q  22 agacaaatcataataggaaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgccacaggtaat 121  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39365586 agacaaaccatagaaggaaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagtttcatattctgtagacatgccacaggtaat 39365685  T
Q  122 gtagaaacctaataaataaagagttaaattttgataaactggcagtgtaaaaag 175  Q
     || ||||| |||||| |||||||||| | |||||| ||||  ||||| |||||    
T  39365686 ctacaaaccgaataaaaaaagagttaagtcttgatacactgttagtgttaaaag 39365739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 39564900 - 39564685
Alignment:
Q  24 acaaatcataataggaaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgccacaggtaatgt 123  Q
    ||||||||||  |||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||    
T  39564900 acaaatcatagcaggaaaaggggaatggttcttccttttgaaccacattctataacctttgatgaagttacatattccgtagacatgccacaggtaatgt 39564801  T
Q  124 agaaacctaataaataaagagttaaattttgataaactggcagtgtaaaaa----------gcaaatcacagtcaatcacatgtgtgactttaaaagtag 213  Q
    ||||||| ||| ||| || | ||||||||||||| ||| | ||||||||||          |||||||||| ||||||| |||||| |||||| ||||||    
T  39564800 agaaaccaaatgaatgaaaatttaaattttgatacact-gaagtgtaaaaaaatttacattgcaaatcacattcaatcatatgtgtcactttagaagtag 39564702  T
Q  214 ttataattaaagtcaaa 230  Q
     ||||||||||||||||    
T  39564701 gtataattaaagtcaaa 39564685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 39548048 - 39547927
Alignment:
Q  22 agacaaatcataataggaaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgccacaggtaat 121  Q
    |||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39548048 agacaaatcatagtaggaaaagaggaatggttctcccttttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgccacaggtgat 39547949  T
Q  122 gtagaaacctaataaataaaga 143  Q
    ||||||||| | ||| ||||||    
T  39547948 gtagaaaccaattaagtaaaga 39547927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 39589776 - 39589693
Alignment:
Q  39 aaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgccacaggtaatg 122  Q
    |||||||||||||||||||| |||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||    
T  39589776 aaaagaggaatggttcttccttttgaaccacattgtgtcacctttgatgaagtaacatattctgtagacatgccacaggtaatg 39589693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 39575535 - 39575457
Alignment:
Q  43 gaggaatggttcttccatttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgccacaggtaat 121  Q
    |||||||||||||||| ||||||| |||||| || |||||||||||||| ||||||||||| |||||||| | ||||||    
T  39575535 gaggaatggttcttccttttgaacaacattctataacctttgatgaagtaacatattctgtcgacatgcctccggtaat 39575457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 212 - 326
Target Start/End: Original strand, 39338354 - 39338469
Alignment:
Q  212 agttataattaaagtcaaatgtttgtaatgatctgac-attataattgattgatagtataaaagtttttacactaataatgtatacagattaaatccata 310  Q
    |||||||||||| || |||||||| ||||||| |||| |||||||||||||||||||||||||  ||||| || ||| |||| |||| |||  ||||  |    
T  39338354 agttataattaatgttaaatgtttctaatgatttgacgattataattgattgatagtataaaatgttttaaacgaatgatgtttacaaattggatcccaa 39338453  T
Q  311 aataaattggcaaaaa 326  Q
    |||||||||| |||||    
T  39338454 aataaattggaaaaaa 39338469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 39622546 - 39622462
Alignment:
Q  37 ggaaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgccacaggtaat 121  Q
    |||| ||||||||| ||||| | ||||||||||| |  ||||||||||||||||| |||||||| || || ||||||||||||||    
T  39622546 ggaagagaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatattcagttgatatgccacaggtaat 39622462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 6366199 - 6366249
Alignment:
Q  193 catgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgat 243  Q
    ||||||||||||||||| |||||||| |||||||||||| ||| |||||||    
T  6366199 catgtgtgactttaaaaatagttatacttaaagtcaaatatttttaatgat 6366249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 39353197 - 39353259
Alignment:
Q  212 agttataattaaagtcaaatgtttgtaatgatctgaca-ttataattgattgatagtataaaa 273  Q
    ||||||||||||||| |||| ||| ||||| ||||||| ||||||||||||||||||| ||||    
T  39353197 agttataattaaagttaaatatttctaatggtctgacagttataattgattgatagtaaaaaa 39353259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 5376363 - 5376308
Alignment:
Q  193 catgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctgac 248  Q
    |||||| ||||||| |||||||||| |||| ||||||| |||| ||||||||||||    
T  5376363 catgtgcgactttagaagtagttatgattacagtcaaacgtttttaatgatctgac 5376308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 36853097 - 36853168
Alignment:
Q  177 aaatcacagtcaatcacatgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctgac 248  Q
    ||||||||  |||||| ||||||||||||| |||||||||| |||| | |||||| ||| || |||||||||    
T  36853097 aaatcacaaccaatcatatgtgtgactttagaagtagttatgattataatcaaatatttttattgatctgac 36853168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 35170028 - 35169991
Alignment:
Q  193 catgtgtgactttaaaagtagttataattaaagtcaaa 230  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  35170028 catgtgtgactttagaagtagttatgattaaagtcaaa 35169991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 46937003 - 46937060
Alignment:
Q  176 caaatcacagtcaatcacatgtgtgactttaaaagtagttataattaaagtcaaatgt 233  Q
    ||||||||| ||||||| ||||||||||||| ||| | |||| |||||| ||||||||    
T  46937003 caaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 46937060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 2886663 - 2886742
Alignment:
Q  41 aagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgccacaggtaa 120  Q
    |||||||||||||||||| |||||||||||||| ||  ||||||| || |||  ||||||||| ||||||||||||||||    
T  2886663 aagaggaatggttcttccttttgaaccacattctatagcctttgacgatgttgtatattctgttgacatgccacaggtaa 2886742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 2897714 - 2897632
Alignment:
Q  38 gaaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgccacaggtaa 120  Q
    |||||| |||||| ||||||| |||||||||||||| || | ||||||  |||||  |||||| || ||||||||||||||||    
T  2897714 gaaaaggggaatgattcttccttttgaaccacattctataatctttgaccaagttgtatattcagttgacatgccacaggtaa 2897632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 37848421 - 37848486
Alignment:
Q  199 tgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctg-acattataattgattga 263  Q
    ||||||||||||||||||  ||||||||||||||||| || ||||||| |  ||||||||||||||    
T  37848421 tgactttaaaagtagttacgattaaagtcaaatgtttttagtgatctgaagtttataattgattga 37848486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 1132223 - 1132170
Alignment:
Q  195 tgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctgac 248  Q
    |||||| ||||| || ||||||| || |||||||||||||| ||||||||||||    
T  1132223 tgtgtgtctttagaattagttatgataaaagtcaaatgtttctaatgatctgac 1132170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 21329834 - 21329871
Alignment:
Q  195 tgtgtgactttaaaagtagttataattaaagtcaaatg 232  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  21329834 tgtgtgactttaaaagtaattataattaaattcaaatg 21329871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 44211476 - 44211408
Alignment:
Q  45 ggaatggttcttccatttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgcca 113  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||  ||  ||| ||||| |||||||||    
T  44211476 ggaatggttcttccatttgaaccacattctatcacttttgatgatattgtatactctgttgacatgcca 44211408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 44234460 - 44234392
Alignment:
Q  45 ggaatggttcttccatttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgcca 113  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||  ||  ||| ||||| |||||||||    
T  44234460 ggaatggttcttccatttgaaccacattctatcacttttgatgatattgtatactctgttgacatgcca 44234392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 44223638 - 44223595
Alignment:
Q  45 ggaatggttcttccatttgaaccacattcaatcacctttgatga 88  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||    
T  44223638 ggaatggttcttccatttgaaccacattctatcacttttgatga 44223595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 10231857 - 10231945
Alignment:
Q  186 tcaatcacatgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctga-cattataattgattgatagtataaaa 273  Q
    ||||||| |||||||| |||| || ||||||| || ||||||||||| || |||||||||||  ||| | ||||||||| |||||||||    
T  10231857 tcaatcatatgtgtgattttagaaatagttatgataaaagtcaaatgattttaatgatctgatgattgtgattgattgacagtataaaa 10231945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 9529529 - 9529574
Alignment:
Q  174 agcaaatcacagtcaatcacatgtgtgactttaaaagtagttataa 219  Q
    |||||||||||  |||||| ||||||||||||||||||| ||||||    
T  9529529 agcaaatcacaaccaatcatatgtgtgactttaaaagtaattataa 9529574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 267
Target Start/End: Complemental strand, 33657496 - 33657404
Alignment:
Q  176 caaatcacagtcaatcacatgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctgac-attataattgattgatagt 267  Q
    ||||||||| ||| | | ||| |||||||||||| |||||||  |||||||||||| |||  |||||| ||||  |||| |||||||||||||    
T  33657496 caaatcacaatcactaatatgagtgactttaaaaatagttatggttaaagtcaaatattttcaatgatttgacggttatgattgattgatagt 33657404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 3017471 - 3017526
Alignment:
Q  193 catgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctgac 248  Q
    ||||||||||||| ||||||||||| ||||||||||||  ||| ||||||||||||    
T  3017471 catgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgac 3017526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 10744309 - 10744258
Alignment:
Q  197 tgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctgac 248  Q
    |||||||||| ||| ||||||||||||||||||| |||| ||||||| ||||    
T  10744309 tgtgactttagaagcagttataattaaagtcaaacgtttttaatgatgtgac 10744258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 26762938 - 26762851
Alignment:
Q  177 aaatcacagtcaatcacatgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctga-cattataattgattga 263  Q
    |||||||| |||||||  ||| |||||||| ||||| |||| |||||||||||| |||| || ||||||||  ||||| |||||||||    
T  26762938 aaatcacaatcaatcatttgtatgactttagaagtaattatgattaaagtcaaacgtttttactgatctgaggattatgattgattga 26762851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 18361298 - 18361353
Alignment:
Q  193 catgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctgac 248  Q
    ||||||||||||| ||||||||||| |||||||| ||| |||| ||||||||||||    
T  18361298 catgtgtgactttcaaagtagttatgattaaagttaaacgtttttaatgatctgac 18361353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0929 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0929
Description:

Target: scaffold0929; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 3930 - 3980
Alignment:
Q  193 catgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgat 243  Q
    ||||||||||||||||| |||||||| |||||||||||| ||| |||||||    
T  3930 catgtgtgactttaaaaatagttatacttaaagtcaaatatttttaatgat 3980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 14304015 - 14303945
Alignment:
Q  178 aatcacagtcaatcacatgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctgac 248  Q
    |||||||  |||||| ||| |||||||||||||||||||| ||||||||||||  ||| ||| ||||||||    
T  14304015 aatcacaaccaatcatatgagtgactttaaaagtagttatgattaaagtcaaacttttataacgatctgac 14303945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 32102381 - 32102313
Alignment:
Q  195 tgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctgacattataattgattga 263  Q
    ||||||| ||||||| || |||| ||||||||||||  ||| ||||||| | ||||||||| |||||||    
T  32102381 tgtgtgattttaaaattatttatgattaaagtcaaacatttttaatgatttaacattataagtgattga 32102313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 7705385 - 7705330
Alignment:
Q  193 catgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctgac 248  Q
    ||||||||||||||||||| ||||| || ||||||||||||||  ||||| |||||    
T  7705385 catgtgtgactttaaaagtggttatgataaaagtcaaatgtttccaatgacctgac 7705330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 18871063 - 18871011
Alignment:
Q  197 tgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctgaca 249  Q
    |||||||||| |||||||||| ||||| |||||| || | |||||||||||||    
T  18871063 tgtgactttagaagtagttatcattaaggtcaaacgtgtttaatgatctgaca 18871011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 35056877 - 35056825
Alignment:
Q  194 atgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctg 246  Q
    |||||||| |||| ||||||||||||||||| |||||| ||| || |||||||    
T  35056877 atgtgtgattttagaagtagttataattaaaatcaaatatttttattgatctg 35056825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 11092883 - 11092822
Alignment:
Q  186 tcaatcacatgtgtgactttaaaagtagttataattaaagtcaaatgtttgtaatgatctga 247  Q
    |||||||  ||| |||||||| |||| |||||||| |||||||||| ||| |||||||||||    
T  11092883 tcaatcatctgtttgactttagaagtggttataataaaagtcaaatctttctaatgatctga 11092822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University