View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9333_low_5 (Length: 270)
Name: NF9333_low_5
Description: NF9333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9333_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 35900653 - 35900401
Alignment:
| Q |
1 |
tttgatagtgaagcaatataaaacaagaaactcactcatccagctttggtatgagcaggaccatgaatggccttgatagtgtattctctgaaatattcag |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35900653 |
tttgatagtgaagcaatataaaacaagatactcactcatccagctttggtatgagcaggaccatgaatggccttgatagtgtattctctgaaatattcag |
35900554 |
T |
|
| Q |
101 |
gaatagacaagcctaagaaaaaggcaaaaatgatagccctacagaagctgnnnnnnntataacaattatcataagaacatacatactaaggaccatgccg |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35900553 |
gaatagacaagcctaagaaaagggcaaaaatgatagccctacagaagctgaaaaaaatataacaattatcataagaacatacatactaaggaccatgccg |
35900454 |
T |
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| Q |
201 |
tttgaatttcctttttcattaggaattatcttgtaaattttttaacatgtcct |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35900453 |
tttgaatttcctttttcattaggaattatcttgtaaattttttaacatgtcct |
35900401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 35897754 - 35897645
Alignment:
| Q |
18 |
ataaaacaagaaactcactcatccagctttggtatgagcaggaccatgaatggccttgatagtgtattctctgaaatattcaggaatagacaagcctaag |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35897754 |
ataaaacaagaaactcacccatccagctttggtatgagcaggaccatgaagggccctgatagtgtattctctgaaatattcaggaatagacaagcctaag |
35897655 |
T |
|
| Q |
118 |
aaaaaggcaa |
127 |
Q |
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|||| ||||| |
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| T |
35897654 |
aaaagggcaa |
35897645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 35903773 - 35903674
Alignment:
| Q |
28 |
aaactcactcatccagctttggtatgagcaggaccatgaatggccttgatagtgtattctctgaaatattcaggaatagacaagcctaagaaaaaggcaa |
127 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||| |||| | |||||||| |||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
35903773 |
aaactcacccatccagctttggtatgagcagggccatgaagggccctaatagtgtactctctgaaatgttcaggaatagacaagcctaagaaaagggcaa |
35903674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 35897599 - 35897537
Alignment:
| Q |
124 |
gcaaaaatgatagccctacagaagctgnnnnnnntataacaattatcataagaacatacatac |
186 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||| |
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| T |
35897599 |
gcaaaaatgatagccctacagaagctgaaaaaaatataacaattaacattagaccatacatac |
35897537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 5044523 - 5044420
Alignment:
| Q |
18 |
ataaaacaagaaactcactcatccagctttggtatgagcaggaccatgaatggccttgatagtgtattctctgaaatattcaggaatagacaagcctaag |
117 |
Q |
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||||||||| |||||||| |||| ||| || ||||||||||| ||||||| ||||||| |||| ||||||||||||| ||||||||||| || || ||| |
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| T |
5044523 |
ataaaacaacaaactcacccatctagcctttgtatgagcagggccatgaagggccttggaagtgaattctctgaaatactcaggaatagataatcccaag |
5044424 |
T |
|
| Q |
118 |
aaaa |
121 |
Q |
| |
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|||| |
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|
| T |
5044423 |
aaaa |
5044420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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