View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9334_low_1 (Length: 415)
Name: NF9334_low_1
Description: NF9334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9334_low_1 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 12 - 397
Target Start/End: Complemental strand, 151924 - 151539
Alignment:
| Q |
12 |
attatactcaatgcaaaccagcaacaaaatacttcaaatgccaaatatagcccatcaactaaactccctaatcagattcagaagaaaaatagaatatcaa |
111 |
Q |
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| T |
151924 |
attatactcaatgcaaaccagcaacaaaatacttcaaatgtcaaatatagcccatcaactaaactccctaatcagattcagaagaaaaatagaatatcaa |
151825 |
T |
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| Q |
112 |
tcttttcagtaatcacattcacaaaaaacagttcaagtcccacttccggagcaaaaccaagtgtttcttacacaagtcaaacccatctttgttacttctt |
211 |
Q |
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| T |
151824 |
tcttttcagtaatcacattcacaaaaaacagttcaagtcccacttccggagcaaaaccaagtgtttcttacacaagtcaaacccatctttgttacttctt |
151725 |
T |
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| Q |
212 |
aattttacttcctccgttcaatacattatctactaccacattgaacagtgacagctcattagaaatcacttacctatgaagcaccaaaacgaaacaaaca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
151724 |
aattttacttcctccgttcaatacattatctactaccacattgaacagtgacagctcattagaaatcacttacctatgaagcaccaaaacaaaacaaaca |
151625 |
T |
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| Q |
312 |
caggacacaacactaacaagtcgaaactaataatttgagaaaaaggaattactgaatgaaactatgacgcggccaccgaaaattat |
397 |
Q |
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| T |
151624 |
caggacacgacactaacaagtcgacactaataatttgagaaaaaggaattactgaatgaaactatgacgcggccaccgaaaattat |
151539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 52239010 - 52239080
Alignment:
| Q |
183 |
acaagtcaaacccatctttgttacttcttaattttacttcctccgttcaatacattatctactaccacatt |
253 |
Q |
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| T |
52239010 |
acaaatcacacccatcttcgtttgctcttaaattcacttcctcagttcaatacattatctactaccacatt |
52239080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 6916597 - 6916667
Alignment:
| Q |
183 |
acaagtcaaacccatctttgttacttcttaattttacttcctccgttcaatacattatctactaccacatt |
253 |
Q |
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| T |
6916597 |
acaagtcatacccatctttgtttgctcttaattttacttcatcatttcaatatgttgtctactaccacatt |
6916667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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